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| 1 | Gm Ms1 encodes a kinesin-like protein essential for male fertility in soybean(Glycine max L.)显示文摘The application of heterosis is a promising approach for greatly increasing yield in soybean(Glycine max L.). Nuclear male sterility is essential for hybrid seed production and the utilization of heterosis. Here we report the cloning of the gene underlying the soybean male-sterile mutant ms-1,which has been widely used for recurrent selection in soybean breeding programs. We initially delimited the ms1 locus to a 16.15 kb region on chromosome13, based on SLAF_BSA sequencing followed by genotyping of an F_(2) population segregating for the locus. Compared with the same region in fertile plants, the mutant region lacks a sequence of approximately 38.7 kb containing five protein-coding genes, including an ortholog of the kinesin-like protein gene NACK2, named Gm Ms1. The Gm Ms1 knockout plants generated via CRISPR/Casmediated gene editing displayed a complete malesterile phenotype. Metabolic profiling showed that fertile anthers accumulated starch and sucrose normally, whereas sterile anthers had higher anthocyanin levels and lower flavonoid levels and lower antioxidant enzyme activities. These results provide insights into the molecular mechanisms governing male sterility and demonstrate that Gm Ms1 could be used to create male-sterile lines through targeted mutagenesis. These findings pave the way for designing seed production technology and an intelligent male-sterile line system to utilize heterosis in soybean. | Muhammad Nadeem Andong Chen Huilong Hong Dongdong Li Jiajia Li Duo Zhao Wei Wang Xiaobo Wang Lijuan Qiu | 2021 | Journal of Integrative Plant Biology2021，63，6： | 6 |
| 2 | An Ontology-Based Framework for Semi-Automatic Schema Integration显示文摘Currently, schema integration frameworks use approaches like rule-based, machine learning, etc. This paper presents an ontology-based wrapper-mediator framework that uses both the rule-based and machine learning strategies at the same time. The proposed framework uses global and local ontologies for resolving syntactic and semantic heterogeneity,and XML for interoperability. The concepts in the candidate schemas are merged on the basis of the similarity coefficient,which is calculated using the defined rules and the prior mappings stored in the case-base. | Zille Huma Muhammad Jaffar-Ur Rehman Nadeem Iftikhar | 2005 | Journal of Computer Science & Technology2005，20，6： | 6 |
| 3 | Concomitant-chemoradiotherapy-associated oral lesions in patients with oral squamous-cell carcinoma显示文摘Objective:Oral squamous-cell carcinoma(OSCC)accounts for >90% of oral cancers affecting adults mostly between the fourth to seventh decades of life.The most common OSCC treatment is concomitant chemoradiotherapy(CCRT)having both locoregional and distant control,but CCRT has acute and chronic toxic effects on adjacent normal tissue.This study aimed to determine the side effects of CCRT on the oral mucosa and to characterize the clinicopathology of oral lesions in patients with OSCC.Methods:This descriptive,cross-sectional study was certified by the Ethical Review Committee(UHS/Education/126-12/2728)of the University of Health Sciences,Lahore,Pakistan.OSSC patients(n=81)with various histological subtypes,grades,and stages were recruited,and findings on their oral examination were recorded.These patients received 70,90,and 119 Gy of radiotherapy dosages in combination with the chemotherapy drugs cisplatin and 5-fluorouracil.Data were analyzed using SPSS 20.0.Results:The most common presentation of OSCC was a nonhealing ulcer(63%) involving tongue(55.6%).Clinical findings included mucositis(92.6%)and xerostomia of mild,moderate,and severe degrees in 11.1%,46.9%,and 35.8% cases,respectively.Ulcers(87.7%),palpable lymph nodes(64.2%),limited mouth opening(64.2%)and fistula(40.7%) were also observed.In females,the association of radiotherapy dosage with limited mouth opening,xerostomia,and histological grading was statistically significant(P<0.05).The association of chemotherapy drugs with xerostomia(P=0.003)was also statistically significant.Conclusions:CCRT induced mucositis,xerostomia,and trismus in patients with OSCC. | Sadia Minhas Muhammad Kashif Wasif Altaf Nadeem Afzal Abdul Hanan Nagi | 2017 | Cancer Biology & Medicine2017，14，2： | 6 |
| 4 | Gene-gene,gene-environment,gene-nutrient interactions and single nucleotide polymorphisms of inflammatory cytokines显示文摘Inflammation plays a significant role in the etiology of type 2 diabetes mellitus(T2DM).The rise in the pro-inflammatory cytokines is the essential step in glucotoxicity and lipotoxicity induced mitochondrial injury,oxidative stress and beta cell apoptosis in T2 DM.Among the recognized markers are interleukin(IL)-6,IL-1,IL-10,IL-18,tissue necrosis factor-alpha(TNF-α),C-reactive protein,resistin,adiponectin,tissue plasminogen activator,fibrinogen and heptoglobins.Diabetes mellitus has firm genetic and very strong environmental influence; exhibiting a polygenic mode of inheritance.Many single nucleotide polymorphisms(SNPs) in various genes including those of pro and antiinflammatory cytokines have been reported as a risk for T2 DM.Not all the SNPs have been confirmed by unifying results in different studies and wide variations have been reported in various ethnic groups.The inter-ethnic variations can be explained by the fact that gene expression may be regulated by gene-gene,gene-environment and gene-nutrient interactions.This review highlights the impact of these interactions on determining the role of single nucleotide polymorphism of IL-6,TNF-α,resistin and adiponectin in pathogenesis of T2 DM. | Amina Nadeem Sadaf Mumtaz Abdul Khaliq Naveed Muhammad Aslam Arif Siddiqui Ghulam Mustafa Lodhi Tausif Ahmad | 2015 | World Journal of Diabetes2015，6，4： | 4 |
| 5 | Identification of a novel seed size associated locus SW9-1 in soybean显示文摘Seed size is one of the vital traits determining seed appearance, quality, and yield. Untangling the genetic mechanisms regulating soybean 100-seed weight (100-SW), seed length and seed width across environments may provide a theoretical basis for improving seed yield. However, there are few reports related to QTL mapping of 100-SW across multiple ecological regions. In this study, 21 loci associated with seed size traits were identified using a genome-wide association of 5361 single nucleotide polymorphisms (SNPs) across three ecoregions in China, which could explain 8.12%–14.25% of the phenotypic variance respectively. A new locus, named as SW9-1 on chromosome 9 that explained 10.05%–10.93% of the seed weight variance was found significantly related to seed size traits, and was not previously reported. The selection effect analysis showed that SW9-1 locus has a relatively high phenotypic effect (13.67) on 100-SW, with a greater contribution by the accessions with bigger seeds (3.69) than the accessions with small seeds (1.66). Increases in seed weight were accompanied by increases in the frequency of SW9-1T allele, with >90% of the bred varieties with a 100-SW >30 g carrying SW9-1T. Analysis of SW9-1 allelic variation in additional soybean accessions showed that SW9-1T allele accounting for 13.83% of the wild accessions, while in 46.55% and 51.57% of the landraces and bred accessions, respectively, this results indicating that the SW9-1 locus has been subjected to artificial selection during the early stages of soybean breeding, especially the utilization of SW9-1T in edamame for big seed. These results suggest that SW9-1 is a novel and reliable locus associated with seed size traits, and might have an important implication for increasing soybean seed weight in molecular design breeding. Cloning this locus in future may provide new insights into the genetic mechanisms underlying soybean seed size traits. | Jiajia Li Jinghui Zhao Yinghui Li Yali Gao Sunan Hua Muhammad Nadeem Genlou Sun Wenming Zhang Jinfeng Hou Xiaobo Wang Lijuan Qiu | 2019 | The Crop Journal2019，7，4： | 4 |
| 6 | Factors influencing hybrid maize farmers' risk attitudes and their perceptions in Punjab Province,Pakistan显示文摘Hybrid maize farmers have to face diverse kinds of climate, biological, price and financial risks. Farmers' risk perceptions and risk attitudes are essential elements influencing farm operations and management decisions. However, this important issue has been overlooked in the contemporary studies and therefore there is a dearth of literature on this important issue. The present research is therefore, an attempt to fill this gap. This study aims to quantify hybrid maize farmers' perceptions of disastrous risks, their attitudes towards risk and to explore the impacts of various farm and farm household factors on farmers' risk attitudes and risk perceptions. The present study is conducted in four hybrid maize growing districts of Punjab Province, Pakistan, using cross-sectional data of 400 hybrid maize farmers. Risk matrix and equally likely certainty equivalent(ELCE) method are used to rank farmers' perceptions of four catastrophic risk sources including climate, biological, price and financial risks and to investigate farmers' risk aversion attitudes, respectively. Furthermore, probit regression is used to analyze the determinants affecting farmers' risk attitudes and risk perceptions. The results of the study showed that majority of farmers are risk averse in nature and perceive price, biological and climate to be potential sources of risks to their farm enterprise. In addition, analysis divulges that distance from farm to main market, off-farm income, location dummies for Sahiwal and Okara, age, maize farming experience, access to extension agent, significantly(either negatively or positively) influence farmers' risk attitudes and risk perceptions. The study delivers valuable insights for farmers, agricultural insurance sector, extension services researchers and agricultural policy makers about the local understanding of risks to hybrid maize crop in developing countries, like Pakistan, and have implications for research on farmers' adaptation to exposed risks. | Shoaib Akhtar LI Gu-cheng Raza Ullah Adnan Nazir Muhammad Amjed Iqbal Muhammad Haseeb Raza Nadeem Iqbal Muhammad Faisal | 2018 | Journal of Integrative Agriculture2018，17，6： | 3 |
| 7 | Endoscopic retrograde cholangiopancreatography guided interventions in the management of pancreatic cancer显示文摘Pancreatic cancer is the leading cause of cancer-related morbidity and mortality with an overall five-year survival of less than 9%in the United States.At presentation,the majority of patients have painless jaundice,pruritis,and malaise,a triad that develops secondary to obstruction,which often occurs late in the course of the disease process.The technical advancements in radiological imaging and endoscopic interventions have played a crucial role in the diagnosis,staging,and management of patients with pancreatic cancer.Endoscopic retrograde cholangiopancreatography(ERCP)-guided diagnosis(with brush cytology,serial pancreatic juice aspiration cytologic examination technique,or biliary biopsy)and therapeutic interventions such as pancreatobiliary decompression,intraductal and relief of gastric outlet obstruction play a pivotal role in the management of advanced pancreatic cancer and are increasingly used due to improved morbidity and complication rates compared to surgical management.In this review,we highlight various ERCP-guided diagnostic and therapeutic interventions for the management of pancreatic cancer. | Muhammad Nadeem Yousaf Hamid Ehsan Ahsan Wahab Ahmad Muneeb Fizah S Chaudhary Richard Williams Christopher J Haas | 2020 | World Journal of Gastrointestinal Endoscopy2020，12，10： | 3 |
| 8 | Growth,yield and water productivity of dry direct seeded rice and transplanted aromatic rice under different irrigation management regimes显示文摘Sustainability of traditionally cultivated rice in the rice-wheat cropping zone(RWCZ)of Pakistan is dwindling due to the high cost of production,declining water resources and escalating labour availability.Thus,farmers and researchers are compelled to find promising alternatives to traditional transplanted rice(TPR).A field study was conducted in Punjab,Pakistan,in 2017 and 2018 to explore the trade-offs between water saving and paddy yield,water productivity and economics of two aromatic rice varieties under dry direct seeded rice(DDSR)and TPR.The experiment was comprised of three irrigation regimes on the basis of soil moisture tension(SMT)viz.,continuous flooded(>–10 kPa SMT),alternate wetting and drying(AWD)(–20 kPa SMT)and aerobic rice(–40 kPa SMT),maintained under TPR and DDSR systems.Two aromatic rice verities:Basmati-515 and Chenab Basmati-2016 were used during both years of study.In both years,DDSR produced higher yields(13–18%)and reduced the total water inputs(8–12%)in comparison to TPR.In comparison to traditional continuous flooded(CF),AWD under DDSR reduced total water input by 27–29%and improved the leaf area index(LAI),tillering,yield(7–9%),and water productivity(44–50%).The performance of AWD with regard to water savings and increased productivity was much higher in DDSR system as compared to AWD in TPR system.Cultivation of DDSR with aerobic irrigation improved water savings(49–55%)and water productivity(22–30%)at the expense of paddy yield reduction(36–39%)and spikelet sterility.With regard to variety,the highest paddy yield(6.6 and 6.7 t ha–1)was recorded in DDSR using Chenab Basmati-2016 under AWD irrigation threshold that attributed to high tiller density and LAI.The economic analysis showed DDSR as more beneficial rice establishment method than TPR with a high benefit-cost ratio(BCR)when the crop was irrigated with AWD irrigation threshold.Our results highlighted that with the use of short duration varieties,DDSR cultivation in conjunction with AWD irrigation can be more beneficial for higher productivity and crop yield. | Muhammad Ishfaq Nadeem Akbar Shakeel Ahmed Anjum Muhammad Anwar-Ul-haq | 2020 | Journal of Integrative Agriculture2020，19，11： | 2 |
| 9 | Candida esophagitis:Risk factors in non-HIV population in Pakistan显示文摘AIM:Candida esophagitis is a frequent infection in immunocompromised patients. This study was designed to determine its characteristics in non- human immune deficiency virus (HIV) infected patients attending a teaching hospital.METHODS: Clinical records of all patients coded by international classification of diseases 9th revision with clinical modifications'(ICD-9-CM), with candida esophagitis diagnosed by esophagogastroduodenoscopy (EGD) and histopathology over a period of 5 years were studied.RESULTS: Fifty-one patients (27 males, 24 females, range 21-77 years old and mean age 52.9 years) fulfilled the criteria (0.34% of the EGD). The common predisposing factors were carcinoma (OR 3.87, CI 1.00-14.99) and diabetes mellitus (OR 4.39, CI 1.34-14.42). The frequent clinical symptoms were retrosternal discomfort, dysphagia and epigastric abdominal pain with endoscopic appearance of scattered mucosal plaques. Another endoscopic lesion was associated with candida esophagitis in 15% patients.CONCLUSION: Carcinomas, diabetes mellitus, corticosteroid and antibiotic therapy are major risk factors for candida esophagitis in Pakistan. It is an easily managed complication that responds to treatment with nystatin. | Javed Yakoob Wasim Jafri Shahab Abid Nadeem Jafri Muhammad Islam Saeed Hamid Hasnain A Shah Akbar S Hussainy | 2003 | World Journal of Gastroenterology2003，9，10： | 2 |
| 10 | Anti-inflammatory activities of Sieboldogenin from Smilax china Linn.: Experimental and computational studies显示文摘 | Inamullah Khan Muhammad Nisar Farooq Ebad Said Nadeem Muhammad Saeed Haroon Khan Samiullah Fazli Khuda Nasiara Karim Zia Ahmad | 2008 | Journal of Ethnopharmacology2008，，1： | 2 |
| 11 | Impact of Land-Use Practices on Sediment Yield in the Dhrabi Watershed of Pakistan显示文摘 | Muhammad Nadeem Iqbal Theib Y. Oweis Muhammad Ashraf Bashir Hussain Abdul | 2012 | Journal of Environmental Science and Engineering(A)2012，1，3： | 2 |
| 12 | A hybrid circuit breaker with fault current limiter circuit in a VSC-HVDC application显示文摘A conventional hybrid circuit breaker(HCB)is used to protect a voltage source converter-based high voltage direct current transmission system(VSC-HVDC)from a short circuit fault.With the increased converter capacity,the DC protection equipment also requires a regular upgrade.This paper adopts a novel type of HCB with a fault current limiter circuit(FCLC),and focuses on the responses of voltage and current during DC faults,which are associated with parameter selection.PSCAD/EMTDC based simulation of a three-terminal VSC-HVDC system confirms the effectiveness and value of HCB with FCLC,by using an equivalent circuit modelling approach.Laboratory experimental tests validate the simulation results.The peak fault current is reduced according to the current limiting inductor(CLI)increase,and can be isolated more quickly.By adopting parallel metal oxide arrester(MOA)with the main branch of HCB,voltage stresses across the breaker components decrease during transient and continuous operation,and less energy needs to be dissipated by the MOA.The remnant current for all cases is transmitted to power dissipating resis-tor(PDR)in the final stage,and the fault current is reduced to the lowest possible value.When the current from the main branch is transferred to the FCLC branch,transient voltage spikes occur,while smaller PDR is required to absorb current in the final stage. | Muhammad Ahmad Chunyang Gong Muhammad Haroon Nadeem Hui Chen Zhixin Wang | 2022 | Protection and Control of Modern Power Systems2022，7，1： | 1 |
| 13 | Application of Micronutrients in Rice-Wheat Cropping System of South Asia显示文摘Rice-wheat cropping system (RWCS) is one of the most important cropping systems in South Asia. However, sustainability of this system is under threat owing to several factors, of which deficiency of micronutrients particularly zinc (Zn), boron (B) and manganese (Mn) is one of the major problems. Continuous rotation of rice and wheat, imbalanced fertilizer use and little/no use of micronutrient-enriched fertilizers induce deficiencies of Zn, B and Mn in the RWCS of South Asia. Here we review that (i) imbalanced fertilizer use and organic matter depletion deteriorate soil structure resulting in low efficiency of applied macro- and micro-nutrients in RWCS.(ii) The micronutrients (Zn, B and Mn) are essentially involved in metabolism of rice and wheat plants, including chlorophyll synthesis, photosynthesis, enzyme activation and membrane integrity.(iii) Availability and uptake of Zn, B and Mn from rhizosphere depend on the physico-chemical soil properties (which differ under aerobic and anaerobic conditions) including soil pH, soil organic matter, soil moisture and interaction of these micronutrients with other nutrients.(iv) Plant ability to uptake and utilize the nutrients is affected by several plant factors such as root architecture, root hairs, transport kinetics parameter and root exudates.(v) Crop management and application of these microelements can help correct the micronutrients deficiency and enhance their grain concentration. | Faisal NADEEM Muhammad FAROOQ | 2019 | Rice science2019，26，6： | 1 |
| 14 | Human colon tissue in organ culture: preservation of normal and neoplastic characteristics显示文摘 | Michael K. Dame Narasimharao Bhagavathula Cohra Mankey Marissa DaSilva Tejaswi Paruchuri Muhammad Nadeem Aslam James Varani | 2010 | In Vitro Cellular & Developmental Biology - Animal2010，，2： | 1 |
| 15 | Engineering electrophilic atomic Ir sites on CeO_(2) colloidal spheres for selectivity control in hydrogenation of α,β-unsaturated carbonyl compounds显示文摘Selective hydrogenation of the carbonyl bond inα,β-unsaturated carbonyl compounds is rather challenging owing to the more feasible hydrogenation of ethylenic bond from both thermodynamic and kinetic aspects.Here,we demonstrate a facile emulsionbased molecule-nanoparticle self-assembly strategy for the atomic engineering of Ir species on three-dimensional CeO_(2)spheres(Ir1@CeO_(2)).When applied to the hydrogenation ofα,β-unsaturated aldehydes,Ir1@CeO_(2)catalyst remarkably exhibited~100%selectivity towards unsaturated alcohols,whereas the formation of Ir nanoparticles on CeO_(2)drastically decreased the selectivity for unsaturated alcohols.Spectroscopic studies revealed that strong metal-support interactions triggered the charge transfer from Ir to CeO_(2),leading to the partial reduction of Ce^(4+)to Ce^(3+)along with the formation new Ir^(δ+)-O_(2)--Ce^(3+)(OV)interfaces.The electrophilic atomic Ir species at the Ir^(δ+)-O_(2)--Ce^(3+)(OV)interfaces would therefore preferentially adsorb and facilitate hydrogenation of polar C=O bond to achieve exceptional selectivity. | Muhammad Mateen Muhammad Nadeem Akhtar Ling Gao Weng-Chon(Max)CHEONG Shanshan Lv Yan Zhou Zheng Chen | 2022 | Nano Research2022，15，8： | 1 |
| 16 | Specific Capacitance and Cyclic Stability of Graphene Based Metal/Metal Oxide Nanocomposites:A Review显示文摘Graphene has become a worldwide admired material among researchers and scientists equally due to its unique richness in mechanical strength,electrical conductivity,optical and thermal properties.Researchers have explored that the composite materials based on graphene and metal/metal oxide nanostructures possess excellent potential for energy storage technologies.In particular,supercapacitors based on such composite materials have engrossed the extreme interest of researchers for its rapid charging/discharging time,safe operation and longer cyclic constancy.Till now,several fabrication techniques for composite materials and their energy storage applications have been explored.Here,specially,we have concentrated on the hottest research progress for the fabrication of graphene oxide and metal/metal oxide nanocomposites.We also emphasized on the characteristics and properties of supercapacitors fabricated using these composite materials.Moreover,our study is focused on the specific capacitance and cyclic stability of various composites to haul out the most efficient material for supercapacitor applications. | Abdul Waheed Anwar Abdul Majeed Nadeem Iqbal Wasi Ullah Ahmad Shuaib Usman Ilyas Fozia Bibi Hafiz Muhammad Rafique | 2015 | Journal of Materials Science & Technology2015，31，7： | 1 |
| 17 | Investigation of Cutting Parameters Effect for Minimization of Surface Roughness in Internal Turning显示文摘 | Muhammad Munawar Joseph Ching-Shihn Chen Nadeem Ahmad Mufti | 2011 | International Journal of Precision Engineering And Manufacturing2011，12，1： | 1 |
| 18 | Seroprevalence of Babesia caballi and Theileria equi in five draught equine populated metropolises of Punjab, Pakistan显示文摘 | Muhammad Hammad Hussain Muhammad Saqib Fahad Raza Ghulam Muhammad Muhammad Nadeem Asi Muhammad Khalid Mansoor Muhammad Saleem Abdul Jabbar | 2014 | Veterinary Parasitology2014，，： | 1 |
| 19 | Association of Interferon-Alpha and Ribavirin-Induced Thyroid Dysfunction with Severity of Disease and Response to Treatment in Pakistani Asian Patients of Chronic Hepatitis C显示文摘 | Amina Nadeem Muhammad Aslam Alessandro Antonelli | 2012 | <journal-title>Hepatitis Research and Treatment2012，，： | 1 |
| 20 | Pomeganate as a cosmeceutieal source: Pomegranate fractions promote proliferation and procollagen synthesis and inhibit matrix metalloproteinase-1 production in human skin cells显示文摘 | Muhammad Nadeem Aslam Ephraim Philip Lansky and James Varani | 2005 | Journal of Ethnopharmacology2005，103，3： | 1 |
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