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| 1 | Phylogenetic Analysis of the Plant-specific Zinc Finger-Homeobox and Mini Zinc Finger Gene Families显示文摘Zinc finger-homeodomain proteins (ZHD) are present in many plants; however, the evolutionary history of the ZHD gene family remains largely unknown. We show here that ZHD genes are plant-specific, nearly all intronless, and related to MINI ZINC FINGER (MIF) genes that possess only the zinc finger. Phylogenetic analyses of ZHD genes from representative land plants suggest that non-seed plant ZHD genes occupy basal positions and angiosperm homologs form seven distinct clades. Several clades contain genes from two or more major angiosperm groups, including eudicots, monocots, magnoliids, and other basal angiosperms, indicating that several duplications occurred before the diversification of flowering plants. In addition, specific lineages have experienced more recent duplications. Unlike the ZHD genes, MIFs are found only from seed plants, possibly derived from ZHDs by loss of the homeodomain before the divergence of seed plants. Moreover, the MIF genes have also undergone relatively recent gene duplications. Finally, genome duplication might have contributed substantially to the expansion of family size in angiosperms and caused a high level of functional redundancy/overlap in these genes. | Claude W. dePamphilis | 2008 | Journal of Integrative Plant Biology2008，50，8： | 12 |
| 2 | Disintegration of the Scrophulariaceae 显示文摘 | OLMSTEAD R G DEPAMPHILIS C W WOLFE A D | 2001 | American Journal of Botany2001，88，2： | 1 |
| 3 | Selective killing of malignant cancer cells by suppression of geminin activity显示文摘 | ZHU W G MELVIN L DEPAMPHILIS | 2009 | Cancer Res2009，69，11： | 1 |
| 4 | Identifying 5 - methyleytosine and related modifications in DNA genomes 显示文摘 | Rein T Depamphilis ML Zorbas H | 1998 | Nucleic Acids Res1998，26，10： | 1 |
| 5 | Cell cycle dependent regulation of the origin recognition complex显示文摘 | DePamphilis ML | 2005 | Cell Cycle2005，4，1： | 1 |
| 6 | Regulating the licensing of DNA replication origin in rnetazoa显示文摘 | DePamphilis M L Blow J J Ohosh S Saha T Noguchi K Vassilev A | 2006 | Curr Opin Cell Biol2006，18，： | 1 |
| 7 | Efficacy and safety of pegylated (40-kd) interferon α-2a compared with interferon α-2a in noncirrhotic patients with chronic hepatitis C显示文摘 | K.Rajender Reddy Teresa L. Wright Paul J. Pockros Mitchell Shiffman Gregory Everson Robert Reindollar Michael W. Fried Preston P. Purdum Donald Jensen Coleman Smith William M. Lee Thomas D. Boyer Amy Lin Simon Pedder Jean DePamphilis | 2001 | Hepatology2001，，2： | 1 |
| 8 | Evolution of plastidgene rps2 in a lineage of hemiparasitic and holoparasitic plants:Many losses of photosynthesis and complex patterns of rate variation显示文摘 | dePamphilis C W Young N D Wolfe A D | 1997 | Proc Natl Acad Sci1997，94，： | 1 |
| 9 | Disintegration of the Scrophulariaceae显示文摘 | Olmstead R G dePamphilis C W Wolfe A D Young N D Elisens W J Reeves P A | 2001 | Amer J Bot2001，8，： | 1 |
| 10 | Regulation of gene expression at the beginning of mammalian development and the TEAD family of transcription factors 显示文摘 | Kaneko K J DePamphilis ML | 1998 | Dev Genet1998，22，： | 1 |
| 11 | Selective killing of cancer cells by suppression of Geminin activity显示文摘 | Zhu W DePamphilis ML | | 0，，： | 1 |
| 12 | The ABCs of floral evolution显示文摘 | MaH Depamphilis C | 2000 | Cell2000，101，1： | 1 |
| 13 | Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny显示文摘 | Barkman T J Chenery G McNeal J R Lyons-Weiler J dePamphili C W | 2000 | Proc Nat Acad Sci USA2000，97，13： | 1 |
| 14 | The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus ) 显示文摘 | MING R HOU S B FENG Y YU Q Y DIONNE-LAPORTE A SAW J H SENIN P WANG W LY B V LEWIS K L T SALZBERG S L FENG L JONES M R SKELTON R L MURRAY J E CHEN C X QIAN W B SHEN J G DU P EUSTICE M TONG E TANG H B LYONS E PAULL R E MICHAEL T P WALL K RICE D W AL- BERT H WANG M L ZHU Y J SCHATZ M NAGARAJAN N A- COB R A GUAN P Z BLAS A WAI C M ACKERMAN C M REN Y LIU C WANG J M WANG J P NA J K SHAKIROV E V HAAS B THIMMAPURAM J NELSON D WANG X Y BOWERS J E GSCHWEND A R DELCHER A L SINGH R SUZUKI J Y TRI- PATHI S NEUPANE K WEI H R IRIKURA B PAIDI M JIANG N ZHANG W L PRESTING G WINDSOR A NAVAJAS-P?REZ R TORRES M J FELTUS F A PORTER B LI Y J BURROUGHS A M LUO M C LIU L CHRISTOPHER D A MOUNT S M MOORE P H SUGIMURA T JIANG J M SCHULER M A FRIEDMAN V MITCHELL-OLDS T SHIPPEN D E DEPAMPHILIS C W PALMER J D FREELING M PATERSON A H GONSALVES D WANG L ALAM M | 2008 | Nature2008，452，7190： | 1 |
| 15 | Transition from maternal to embryonic control in early mammalian development: a comparison of several species显示文摘 | Telford NA Waston AJ Depamphilis ML | 1990 | Mol Reprod Dev1990，26，1： | 1 |
| 16 | To B or not to B a flower:the role of DEFICIENS and GLOBOSA orthologs in the evolution of the angiosperms 显示文摘 | Zahn L M Leebens-Mack J dePamphilis C W | 2005 | Journal of Heredity2005，96，： | 1 |
| 17 | Independent and combined analyses of sequences from all three genomic compartments converge on the root of flowering plant phylogeny显示文摘 | Barkman TJ Chenery G McNeal JR Lyons-Weiler J Ellisens W J Moore G Wolfe AD dePamphilis CW | | 0，，： | 1 |
| 18 | Evolution of plant MADS box transcription factors:Evidence for shifts in selection associated with early angiosperm diversification and concerted gene duplications显示文摘 | Shan H Zahn L Guindon S Wall P K Kong H Ma H DePamphilis C W Leebens-Mack J | | 0，，： | 1 |
| 19 | The draft genome of the transgenic tropical fruit tree papaya (Caricapapaya Linnaeus) 显示文摘 | MING R HOU S FENG Y YU Q DIONNE-LAPORTE A SAW J H SENIN P WANG W LY B V LEWIS K L SALZBERG S L FENG L JONES M R SKELTON R L MURRAY J E CHEN C QIAN W SHEN J DU P EUSTICE M TONG E TANG H LYONS E PAULL R E MICHAEL T P WALL K RICE D W ALBERT H WANG M L ZHU Y J SCHATZ M NAGARAJAN N ACOB R A GUAN P BLAS A WA1 C M ACKERMAN C M REN Y LIU C WANG J WANG J NA J K SHAKIROV E V HAAS B THIMMAPURAM I NELSON D WANG X BOWERS J E GSCHWEND A R DELCHER A L SINGH R SUZUKI J TRIPATHI S NEUPANE K WEI H IRIKURA B PAIDI M JIANG N ZHANG W PRESTING G WINDSOR A NAVAJAS- P?REZ R TORRES M J FELTUS FA PORTER B LI Y BURROUGHS A M LUO MC LIU L CHRISTOPHER D A MOUNT S M MOORE P H SUGIMURA T JIANG J SCHULER M A FRIEDMAN V MITCHELL-OLDS T SHIPPEN D E DEPAMPHILIS C W PALMER J D FREELING M PATERSON A H GONSALVES D WANG L ALAM M | 2008 | Nature2008，452，： | 1 |
| 20 | Regulation of gene expression at the beginning of mammalian development and the TEAD family of transcription factors显示文摘 | Kaneko KJ DePamphilis ML | | 0，，01： | 1 |
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