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| 1 | bZIP transcription factors in Arabidopsis显示文摘 | Marc Jakoby Bernd Weisshaar Wolfgang Dr?ge-Laser Jesus Vicente-Carbajosa Jens Tiedemann Thomas Kroj Fran?ois Parcy | 2002 | Trends in Plant Science2002，，3： | 2 |
| 2 | Building Transcription Factor Binding Site Models to Understand Gene Regulation in Plants显示文摘Transcription factors (TFs) are key cellular components that control gene expression. They recognize specific DNA sequences, the TF binding sites (TFBSs), and thus are targeted to specific regions of the genome where they can recruit transcriptional co-factors and/or chromatin regulators to fine-tune spatiotemporal gene regulation. Therefore, the identification of TFBSs in genomic sequences and their subsequent quantitative modeling is of crucial importance for understanding and predicting gene expression. Here, we review how TFBSs can be determined experimentally, how the TFBS models can be constructed in silico, and how they can be optimized by taking into account features such as position interdependence within TFBSs, DNA shape, and/or by introducing state-of-the-art computational algorithms such as deep learning methods. In addition, we discuss the integration of context variables into the TFBS modeling, including nucleosome positioning, chromatin states, methylation patterns, 3D genome architectures, and TF cooperative binding, in order to better predict TF binding under cellular contexts. Finally, we explore the possibilities of combining the optimized TFBS model with technological advances, such as targeted TFBS perturbation by CRISPR, to better understand gene regulation, evolution, and plant diversity. | Xuelei Lai Arnaud Stigliani Gilles Vachon Cristel Carles Cezary Smaczniak Chloe Zubieta Kerstin Kaufmann Francois Parcy | 2019 | Molecular Plant2019，12，6： | 2 |
| 3 | Agenetic framework for floral patterning显示文摘 | Parcy F Nilsson O Busch M A Lee I Weigel D | 1998 | Nature1998，395，： | 1 |
| 4 | Current advances in abscisic acid action and signalling显示文摘 | Jér?me Giraudat Fran?ois Parcy Nathalie Bertauche Fran?oise Gosti Jeffrey Leung Peter-Christian Morris Michelle Bouvier-Durand Nicole Vartanian | 1994 | Plant Molecular Biology1994，，5： | 1 |
| 5 | Regulation of gene expression programs during Arabidopsis seed development: roles of the ABI3 locus and of endogenous abscisic acid显示文摘 | Parcy F Val on C Raynal M | 1994 | The Plant Cell Online1994，6，11： | 1 |
| 6 | A genetic framework for floral patterning显示文摘 | PARCY F NILSSON O BUSCH M A | 1998 | Nature1998，395，6702： | 1 |
| 7 | Current advances in abscisic acid action and signaling显示文摘 | GIRAUDAT J PARCY F BERTAUCHE N | 1994 | Plant Mol Biol1994，26，： | 1 |
| 8 | Current advances in abscisic acid action and signaling显示文摘 | Giraudat J Parcy F Bertauche N | 2004 | Plant Mol Bio2004，26，： | 1 |
| 9 | Regulation of gene expression programs during Arabidopsis seed development: Roles of the ABI3 locus and of endogenous abscisic acid显示文摘 | Parcy F Valon C Raynal M | 1994 | The Plant Cell Online1994，6，11： | 1 |
| 10 | Current advances in abscisic acid action and signaling显示文摘 | Parcy F Bertauche N | 1994 | Plant Molecular Biology1994，26，： | 1 |
| 11 | The ABSCISICACID-INSENSITIVE3, FUSCA3 , and LEAFY COTYLEDONI lociact in concert to control mutiple aspects of Arabidopsis seed development显示文摘 | Parcy F Valon C Kohara A Misera S Giraudat J | 1997 | Plant Cell1997，9，： | 1 |
| 12 | A genetic framework for floral pattering 显示文摘 | Parcy F Nilsson O Busch M A Weigel D | 1998 | Nature1998，395，： | 1 |
| 13 | A molecular link between stem cell regulation and floral patterning in Arabidopsis显示文摘 | Lohmann J U Hong R L Hobe M Busch M A Parcy F Simon R Weigel D | | 0，，： | 1 |
| 14 | Current advances in abscisic acid action and signaling显示文摘 | Giraudat J Parcy F Gosti F | 1994 | Plant Mol Biol1994，26，5： | 1 |
| 15 | Evidence for functional interaction between brassinosteroids and cadmium response in Arabidopsis thaliana 显示文摘 | Villiers F Jourdain A Bastien O Leonhardt N Fujioka S Tichtincky G Parcy F Bourguignon J Hugouvieux V | 2012 | Journal of Experimental Botany2012，63，3： | 1 |
| 16 | A genetic framework for floral patterning 显示文摘 | F | 2000 | Trends Plant Sci2000，5，： | 1 |
| 17 | A Molecular Link between Stem Cell Regulation and Floral Patterning in Arabidopsis显示文摘 | Jan U. Lohmann Ray L. Hong Martin Hobe Maximilian A. Busch Fran?ois Parcy Rüdiger Simon Detlef Weigel | | Cell0，，： | 1 |
| 18 | Regulation of gene expression programs during Arabidopsis seed development: roles of the ABI locus and of endogenous abscisic acid显示文摘 | Parcy F Valon C Raynal M | 1994 | Plant Cell1994，6，： | 1 |
| 19 | Regulation of storage protein gene expression in Arabidopsis 显示文摘 | Kroj T Savino G Valon C Giraudat J Parcy F | 2003 | Development2003，130，24： | 1 |
| 20 | Flowering: a time for integration显示文摘 | Parcy F | 2005 | The International Journal of Developmental Biology2005，49，56： | 1 |
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