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| 1 | A complete sequence and comparative analysis of a SARS-associated virus(Isolate BJ01)显示文摘The genome sequence of the Severe Acute Respiratory Syndrome (SARS)-associated virus provides essential information for the identification of pathogen(s), exploration of etiology and evolution, interpretation of transmission and pathogenesis, development of diagnostics, prevention by future vaccination, and treatment by developing new drugs. We report the complete genome sequence and comparative analysis of an isolate (BJ01) of the coronavirus that has been recognized as a pathogen for SARS. The genome is 29725 nt in size and has 11 ORFs (Open Reading Frames). It is composed of a stable region encoding an RNA-dependent RNA polymerase (composed of 2 ORFs) and a variable region representing 4 CDSs (coding sequences) for viral structural genes (the S, E, M, N proteins) and 5 PUPs (putative uncharacterized proteins). Its gene order is identical to that of other known coronaviruses. The sequence alignment with all known RNA viruses places this virus as a member in the family of Coronaviridae. Thirty putative substitutions have been identified by comparative analysis of the 5 SARS- associated virus genome sequences in GenBank. Fifteen of them lead to possible amino acid changes (non-synonymous mutations) in the proteins. Three amino acid changes, with predicted alteration of physical and chemical features, have been detected in the S protein that is postulated to beinvolved in the immunoreactions between the virus and its host. Two amino acid changes have been detected in the Mprotein, which could be related to viral envelope formation. Phylogenetic analysis suggests the possibility of non-human origin of the SARS-associated viruses but provides noevidence that they are man-made. Further efforts should focus on identifying the etiology of the SARS-associated virus and ruling out conclusively the existence of otherpossible SARS-related pathogen(s). | QIN E'de ZHU Qingyu YU Man FAN Baochang CHANG Guohui SI Bingyin YANG Bao PENG Wenming JIANG Tao LIU Bohua DENG Yongqiang LIU Hong ZHANG Yu WANG Cui LI Yuquan GAN Yonghua LI Xiaoyu L Fushuang TAN Gang CAO Wuchun, YANG Ruifu Institute of Microbiology and Epidemiology, Chinese Academy of Military Medical Sciences, Beijing 100071, China WANG Jian, LI Wei, XU Zuyuan, LI Yan, WU Qingfa, LIN Wei, CHEN Weijun, TANG Lin, DENG Yajun, HAN Yujun, LI Changfeng, LEI Meng, LI Guoqing, LI Wenjie, L Hong, SHI Jianping, TONG Zongzhong, ZHANG Feng, LI Songgang, LIU Bin, LIU Siqi, DONG Wei, WANG Jun, Gane K-S Wong, YU Jun & YANG Huanming* Beijing Genomics Institute, Chinese Academy of Sciences, Beijing 101300 National Center for Genome Information, Beijing 101300, China | 2003 | Chinese Science Bulletin2003，48，10： | 121 |
| 2 | aunalysis of the Genome Sequence of the Medicinal Plant Salvia miltiorrhiza显示文摘 | Haibin Xu Jingyuan Song Hongmei Luo Yujun Zhang Qiushi Li Yingjie Zhu Jiang Xu Ying Li Chi Song Bo Wang Wei Sun Guoan Shen Xin Zhang Jun Qian Aijia Ji Zhichao Xu Xiang Luo Liu He Chuyuan Li Chao Sun Haixia Yah Guanghong Cui Xiwen Li Xian 'en Li Jianhe Wei Juyan Liu Yitao Wang Alice Hayward David Nelson Zemin Ning Reuben J. Peters Xiaoquan Qi Shilin Chen | 2016 | Molecular Plant2016，9，6： | 70 |
| 3 | Temporal variation of soil carbon stock and its controlling factors over the last two decades on the southern Song-nen Plain,Heilongjiang Province显示文摘对全球气候变化的当前的背景,在土壤碳水池和它的控制因素的变化的学习可以在温室气体的缓解或改进帮助土壤角色的评估。这份报纸在 Heilongjiang 省在南部的 Song-nen 平原在土壤碳水池和他们的控制因素学习空间、时间的变化,用在二个不同时期由上收集的土壤数据在 20052007 的多种用途的地区性的 Geochemical 调查,和另外一个玷污在 19821990 进行的调查。学习区域是 1479 t/km2 并且在过去的 20 年里的碳来源,从直到 2005 的 1980 年代,从土壤的实际的碳排放是 0.12 Gt。温度,被发现了线性地被相关玷污器官的碳,是控制器官的碳满足的土壤的主导的 climatologic 因素。我们的学习在器官的碳由升起的温度引起了的土壤的潜在的损失是的相关区域和时间时期显示出那 0.10 Gt ,源于陆地使用变化的潜在的土壤碳排放是 0.09 Gt ,并且温暖和陆地使用变化引起的土壤碳( 0.19 Gt )的联合潜在的损失比得上石块燃料燃烧( 0.21 Gt )的。由于在土壤碳水池变化的时间延期,仍然在温暖和以后将逐渐地被释放的陆地使用变化引起的潜在的排放有 0.07 Gt。 | Xueqi Xia Zhongfang Yang Yan Liao Yujun Cui Yansheng Li | 2010 | Geoscience Frontiers2010，1，1： | 19 |
| 4 | Shiga toxin-producing Escherichia coli O104:H4: An emerging 0important pathogen in food safety显示文摘In 2011, Shiga toxin-producing Escherichia coli O104 : H4 resulted in a large outbreak of bloody diarrhea and hemolytic uremic syndrome (HUS) in Germany and 15 other countries in Europe and North America. This event raised a serious public health crisis and caused more than two billion US dollars in economic losses. In this review, we describe the classification of E. coli, the Germany outbreak, and the characteristics and epidemical source-tracing of the causative agent. We also discuss the genomics analysis of the outbreak organism and propose an open-source genomics analysis as a new strategy in combating the emerging infectious diseases. | CUI YuJun LI DongFang YANG RuiFu | 2013 | Chinese Science Bulletin2013，58，14： | 5 |
| 5 | IL-17A-dependent gut microbiota is essential for regulating diet-induced disorders in mice显示文摘The gut microbiota plays a key role in obesity and related metabolic disorders, and multiple factors including diet, host genotype, and age regulate it. Many studies have examined the contribution of extrinsic factors to the regulation of the gut microbiota, but the importance of the host genetic constitution cannot be ignored. Interleukin 17A(IL-17A), a pro-inflammatory cytokine, is important in the defense against infection and diseases. Here, we investigated the association among IL-17, a high-fat diet(HFD), and the gut microbiota. Mice deficient in IL-17A were resistant to diet-induced obesity and related diseases. Compared with the Ⅱ-17^(-/-)mice, wild-type(WT) mice challenged with HFD showed obvious weight fluctuations, such as those seen in type 2 diabetes, and hematological changes similar to those associated with metabolic syndrome. However, housing WT mice and Ⅱ-17a^(-/-)mice together significantly alleviated these symptoms in the WT mice. A metagenomic analysis of the mouse feces indicated that the microbial community compositions of these two groups differed before HFD feeding. The HFD mediated shifts in the gut microbial compositions, which were associated with the mouse phenotypes.We also identified potentially beneficial and harmful species present during this period, and drew networks of the most abundant species. A functional analysis indicated pathway changes in the WT and Ⅱ-17a^(-/-)mice when fed the HFD. Collectively, these data underscore the importance of the host factor IL-17 A in shaping and regulating the gut microbiota, which conversely, influences the host health. | Yujing Bi Chunxiao Li Lin Liu Jiyuan Zhou Zhengchao Li Huimin Deng Chunyan Wu Yanping Han Yajun Song Yafang Tan Xiaoyi Wang Zongmin Du Yujun Cui Yanfeng Yan Fachao Zhi Guangwei Liu Nan Qin Heping Zhang Ruifu Yang | 2017 | Science Bulletin2017，62，15： | 5 |
| 6 | Alterations in gut microbiota and metabolites associated with altitude-induced cardiac hypertrophy in rats during hypobaric hypoxia challenge显示文摘The gut microbiota is involved in host responses to high altitude.However,the dynamics of intestinal microecology and their association with altitude-related illness are poorly understood.Here,we used a rat model of hypobaric hypoxia challenge to mimic plateau exposure and monitored the gut microbiome,short-chain fatty acids(SCFAs),and bile acids(BAs)over 28 d.We identified weight loss,polycythemia,and pathological cardiac hypertrophy in hypoxic rats,accompanied by a large compositional shift in the gut microbiota,which is mainly driven by the bacterial families of Prevotellaceae,Porphyromonadaceae,and Streptococcaceae.The aberrant gut microbiota was characterized by increased abundance of the Parabacteroides,Alistipes,and Lactococcus genera and a larger Bacteroides to Prevotella ratio.Trans-omics analyses showed that the gut microbiome was significantly correlated with the metabolic abnormalities of SCFAs and BAs in feces,suggesting an interaction network remodeling of the microbiome-metabolome after the hypobaric hypoxia challenge.Interestingly,the transplantation of fecal microbiota significantly increased the diversity of the gut microbiota,partially inhibited the increased abundance of the Bacteroides and Alistipes genera,restored the decrease of plasma propionate,and moderately ameliorated cardiac hypertrophy in hypoxic rats.Our results provide an insight into the longitudinal changes in intestinal microecology during the hypobaric hypoxia challenge.Abnormalities in the gut microbiota and microbial metabolites contribute to the development of high-altitude heart disease in rats. | Zhiyuan Pan Yichen Hu Zongyu Huang Ni Han Yan Li Xiaomei Zhuang Jiye Yin Hui Peng Quansheng Gao Wenpeng Zhang Yong Huang Yujun Cui Yujing Bi Zhenjiang Zech Xu Ruifu Yang | 2022 | Science China(Life Sciences)2022，65，10： | 5 |
| 7 | A study of soil organic carbon distribution and storage in the Northeast Plain of China显示文摘采用联合起来的土壤碳数量(USCA ) 途径,土壤碳存储基于在 20042006 进行的多种用途的地区性的 Geochemical 调查(MRGS ) 越过中国的东北平原被计算。结果显示在表层土(00.2 m ) 的器官的碳(SOC ) 存储,心土(01 m ) 和深土壤(01.8 m ) 是的土壤有 3327.8 t/km2, 12,904.7 t/km2 和 16,157.5 t/km2 的密度的 768.1 山, 2978.4 山和 3729.2 山分别地。而土壤碳密度从东北平原(辽宁)的南部的区域显示出一个清楚的增加趋势,这些价值以表层土特别地与国家一般水准一致,到中间(吉林)和北平原( Heilongjiang )碳密度,从 2284.2 增加了,到 3436.7 和 3861.5 t/km2 ,分别地。与在 19841986 从第二国家土壤调查获得的碳数据(SNSS ) 相比,从 MRGS 的表层土 SOC 存储值被发现由 320.59 山(29.4%) 减少了,与在 20 年的 16.0 山(l.73%) 的平均年度衰落。在平原的南部、中间、北的区域,分别地,土壤碳密度为整个平原与 1389.0 t/km2 的平均价值由 1060.6 t/km2, 1646.4 t/km2 和 1300.2 t/km2 减少了。这些调查结果显示在土壤碳密度的减少根据不同生态系统和陆地使用类型变化了。因此,土壤碳密度的比率被计算以便学习碳,并且进一步探索分发特征在生态系统之间的动态平衡,以及 SOC 的隐遁潜力。 | Xiaohuan Xi Zhongfang Yang Yujun Cui Shumei Sun Chengguang Yu Min Li | 2011 | Geoscience Frontiers2011，2，2： | 5 |
| 8 | Association of the Late Cornified Envelope-3 Genes with Psoriasis and Psoriatic Arthritis:A Systematic Review显示文摘Psoriasis(Ps)and psoriatic arthritis(Ps A)are genetically complex diseases with strong genetic evidence.Recently,susceptibility genes for Ps and Ps A have been identified within the late cornified envelop(LCE)gene cluster,especially the cluster 3(LCE3)genes.It is noteworthy that the deletion of LCE3B and LCE3C(LCE3C_LCE3B-del)is significantly associated with these two diseases.Gene-gene interactions between LCE3 genes and other genes are associated with Ps and Ps A.LCE3 genes also have pleiotropic effect on some autoimmune diseases,such as rheumatoid arthritis,atopic dermatitis and systemic lupus erythematosus.Further studies need to focus on the potential function of LCE3 genes in the pathogenesis of Ps and Ps A in the future. | Changbing Shen Jing Gao Xianyong Yin Yujun Sheng Liangdan Sun Yong Cui Xuejun Zhang | 2015 | Journal of Genetics and Genomics2015，42，2： | 4 |
| 9 | ERMAP is a B7 family-related molecule that negatively regulates T cell and macrophage responses显示文摘T cell activation and tolerance are tightly regulated by costimulatory and coinhibitory molecules.B7 family members play a crucial role in regulating immune responses.In this study,we identified erythroid membrane-associated protein(ERMAP)as a novel T cell inhibitory molecule.ERMAP shares significant sequence and structural homology with existing B7 family members in its extracellular domain.The ERMAP protein is expressed on the cell surface of resting and activated antigen-presenting cells(APCs)and in some tumor tissues.The putative ERMAP receptor is expressed on activated CD4 and CD8 T cells and macrophages.Both mouse and human ERMAP-IgG2a Fc(ERMAP-Ig)fusion proteins inhibit T cell functions in vitro.Administration of ERMAP-Ig protein ameliorates autoimmune diseases,including experimental autoimmune encephalomyelitis and type 1 diabetes,in mice.Anti-ERMAP antibody enhances macrophage phagocytosis of cancer cells in vitro.Furthermore,administration of an anti-ERMAP antibody inhibits tumor growth in mice likely by blocking the inhibitory effects of ERMAP on T cells and macrophages.Our results suggest that therapeutic interaction with the ERMAP inhibitory pathway may represent a novel strategy for treating patients with autoimmune disease or cancer. | Min Su Yujun Lin Cheng Cui Xiaohong Tian Laijun Lai | 2021 | Cellular & Molecular Immunology2021，18，8： | 2 |
| 10 | Distribution of phthalate esters in urban soils of subtropical city, Guangzhou, China显示文摘 | Feng Zeng Kunyan Cui Zhiyong Xie Lina Wu Danling Luo Lixuan Chen Yujun Lin Min Liu Gouxuan Sun | 2008 | Journal of Hazardous Materials2008，，2： | 2 |
| 11 | Phthalate esters (PAEs): Emerging organic contaminants in agricultural soils in peri-urban areas around Guangzhou, China显示文摘 | Feng Zeng Kunyan Cui Zhiyong Xie Lina Wu Min Liu Guoquan Sun Yujun Lin Danling Luo Zunxiang Zeng | 2008 | Environmental Pollution2008，，2： | 2 |
| 12 | Transcriptomic Response to Yersinia pestis:RIG-I Like Receptor Signaling Response Is Detrimental to the Host against Plague显示文摘Bacterial pathogens have evolved various mechanisms to modulate host immune responses for successful infection.In this study,RNAsequencing technology was used to analyze the responses of human monocytes THP1 to Yersinia pestis infection.Over 6000 genes were differentially expressed over the 12 h infection.Kinetic responses of pathogen recognition receptor signaling pathways,apoptosis,antigen processing,and presentation pathway and coagulation system were analyzed in detail.Among them,RIG-I-like receptor(RLR) signaling pathway,which was established for antiviral defense,was significantly affected.Mice lacking MAVS,the adaptor of the RLR signahng pathway,were less sensitive to infection and exhibited lower IFN-P production,higher Thl-type cytokines IFN-y and IL-12 production,and lower Th2-type cytokines EL-4 and IL-13 production in the serum compared with wild-type mice.Moreover,infection of pathogenic bacteria other than Y.pestis also altered the expression of the RLR pathway,suggesting that the response of RLR pathway to bacterial infection is a universal mechanism. | Zongmin Du Huiying Yang Yafang Tan Guang Tian Qingwen Zhang Yujun Cui Yanfeng Yan Xiaohong Wu Zuyun Chen Shiyang Cao Yujing Bi Yanping Han Xiaoyi Wang Yajun Song Ruifu Yan | 2014 | Journal of Genetics and Genomics2014，41，7： | 2 |
| 13 | Soil-atmosphere interaction in earth structures显示文摘The soil-atmosphere interaction was investigated through laboratory testing,field monitoring and numerical monitoring.In the laboratory,the soil water evaporation mechanisms were studied using an environmental chamber equipped with a large number of sensors for controlling both the air parameters and soil parameters.Both sand and clay were considered.In case of sand,a dry layer could be formed during evaporation in the near surface zone where the suction corresponded to the residual volumetric water content.The evaporative surface was situated at a depth where the soil temperature was the lowest.In case of clay,soil cracking occurred,changing the evaporative surface from one-dimensional to three-dimensional nature.The suctionbased evaporation model was adapted to take these phenomena into account by adopting a function of dry layer evolution in the case of sand and by adopting a surface crack ratio and a retative humidity ratio in the case of clay.In the field,the volumetric water content,and the suction as well as the runoff were monitored for an embankment constructed with lime/cement treated soils.It appeared that using precipitation data only did not allow a correct description of the variations of volumetric water content and suction inside the soils,the consideration of water evaporation being essential.It was possible to use a correlation between precipiration and runoff.The hydraulic conductivity was found to be a key parameter controlling the variations of volumetric water content and suction.For the numerical modelling,a fully coupled thermohydraulic model was developed,allowing analyzing the changes in temperature,volumetric water content and suction of soil,with the upper boundary conditions at the interface between soil and atmosphere determined using meteorological data.Comparison between simulations and measurements showed the performance of such numerical approach. | Yujun Cui | 2022 | Journal of Rock Mechanics and Geotechnical Engineering2022，14，1： | 2 |
| 14 | Global bifurcation and multiple results for Sturm–Liouville problems显示文摘 | Yujun Cui Jingxian Sun Yumei Zou | 2010 | Journal of Computational and Applied Mathematics2010，，8： | 1 |
| 15 | An evaluation of the osmotic method of controlling suction显示文摘 | DELAGE P CUI Yujun | 2008 | Geomechanics and Geoengineer- ing2008，3，1： | 1 |
| 16 | Existence of positive solutions for 2n-order singular superlinear boundary value problems显示文摘 | Cui Yujun Zou Yumei | 2008 | Computers and Mathematics with Applications2008，56，： | 1 |
| 17 | Occurrence of phthalate esters in water and sediment of urban lakes in a subtropical city, Guangzhou, South China显示文摘 | Feng Zeng Kunyan Cui Zhiyong Xie Min Liu Yangjie Li Yujun Lin Zunxiang Zeng Fangbai Li | 2007 | Environment International2007，，3： | 1 |
| 18 | Desiccation and crack-ing behaviour of clay layer from slurry state under wetting-drying cycles显示文摘 | Tang Chaosheng Cui Yujun Shi Bin | 2011 | Geoderma2011，166，1： | 1 |
| 19 | Carbon-incorporated TiO 2 microspheres: Facile flame assisted hydrolysis of tetrabutyl orthotitanate and photocatalytic hydrogen production显示文摘 | Xiaoyan Zhang Yujun Sun Xiaoli Cui Zhiyu Jiang | 2011 | International Journal of Hydrogen Energy2011，，2： | 1 |
| 20 | Influence of pulse polarity on electron emission property of antiferroelectric ceramic显示文摘The electron emission property of a novel antiferroelectric cathode material lanthanum-doped lead zirconate stannate titanate (PLZST) on the application of positive or negative triggering voltage pulses has been investigated. All experiments were performed in a vacuum of 10^(-5) Torr and at room tempera-ture. It was discovered that there were two electron emission pulses when low positive triggering voltage was applied to the rear electrode, and three electron emission pulses when high positive trig-gering voltage was applied. However there were always two electron emission pulses when negative triggering pulses were applied. This phenomenon is proposed to be a result of both field electron emission at triple junctions and electron emission caused by polarization reversal. The experimental observations indicate that domain movement in the vicinity close to the triple junction under applica-tion of the triggering voltage pulse may be a primary origin of electron emission from PLZST. | SHENG ZhaoXuan FENG YuJun CUI Jie HUANG Xuan XU Zhuo SUN XinLi | 2008 | Chinese Science Bulletin2008，53，12： | 1 |
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