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| 1 | The Power of Inbreeding: NGS-Based GWAS of Rice Reveals Convergent Evolution during Rice Domestication显示文摘低范围的整个染色体的定序是为在人的染色体宽的协会研究的有效策略,由于为遗传型归罪的大参考面板的可获得性。然而,没有引用面板,这策略是否能在另外的种类被利用,是不清楚的。用模拟,我们有效地证明这条途径在象米饭(Oryza sativa L.) 那样的生来的种类是甚至更相关的,它是打电话的 haploid,允许的容易的 haplotype 构造和基于归罪的遗传型,甚至没有大参考面板的可获得性。我们在 1.5 桔牯捡獯潣祰的平均深度从农业米饭微型核心收集的美国部门与描绘得好的显型定序 203 个米饭变化吗?? | Hongru Wang Xun Xu Filipe Garrett Vieira Yunhua Xiao Zhikang Li Jun Wang Rasmus Nielsen Chengcai Chu | 2016 | Molecular Plant2016，9，7： | 17 |
| 2 | Multi-scale phylogenetic structure in coastal dune plant communities across the globe显示文摘Aims Studies integrating phylogenetic history and large-scale community assembly are few,and many questions remain unanswered.Here,we use a global coastal dune plant data set to uncover the important factors in community assembly across scales from the local filtering processes to the global long-term diversification and dispersal dynamics.Coastal dune plant communities occur worldwide under a wide range of climatic and geologic conditions as well as in all biogeographic regions.However,global patterns in the phylogenetic composition of coastal dune plant communities have not previously been studied.Methods The data set comprised vegetation data from 18463 plots in New Zealand,South Africa,South America,North America and Europe.The phylogenetic tree comprised 2241 plant species from 149 families.We calculated phylogenetic clustering(Net Relatedness Index,NRI,and Nearest Taxon Index,NTI)of regional dune floras to estimate the amount of in situ diversification relative to the global dune species pool and evaluated the relative importance of land and climate barriers for these diversification patterns by geographic analyses of phylogenetic similarity.We then tested whether dune plant communities exhibit similar patterns of phylogenetic structure within regions.Finally,we calculated NRI for local communities relative to the regional species pool and tested for an association with functional traits(plant height and seed mass)thought to vary along sea–inland gradients.Important Findings Regional species pools were phylogenetically clustered relative to the global pool,indicating regional diversification.NTI showed stronger clustering than NRI pointing to the importance of especially recent diversifications within regions.The species pools grouped phylogenetically into two clusters on either side of the tropics suggesting greater dispersal rates within hemispheres than between hemispheres.Local NRI plot values confirmed that most communities were also phylogenetically clustered within regions.NRI values decreased with increasing plant height and seed mass,indicating greater phylogenetic clustering in communities with short maximum height and good dispersers prone to wind and tidal disturbance as well as salt spray,consistent with environmental filtering along sea–inland gradients.Height and seed mass both showed significant phylogenetic signal,and NRI tended to correlate negatively with both at the plot level.Low NRI plots tended to represent coastal scrub and forest,whereas high NRI plots tended to represent herb-dominated vegetation.We conclude that regional diversification processes play a role in dune plant community assembly,with convergence in local phylogenetic community structure and local variation in community structure probably reflecting consistent coastal-inland gradients.Our study contributes to a better understanding of the globally distributed dynamic coastal ecosystems and the structuring factors working on dune plant communities across spatial scales and regions. | Ane Kirstine Brunbjerg Jeannine Cavender-Bares Wolf L.Eiserhardt Rasmus Ejrnæs Lonnie W.Aarssen Hannah L.Buckley Estelle Forey Florian Jansen Jens Kattge Cynthia Lane Roy A.Lubke Angela T.Moles Ana Laura Monserrat Robert K.Peet Julissa Roncal Louise Wootton Jens-Christian Svenning | 2014 | Journal of Plant Ecology2014，7，2： | 9 |
| 3 | Field scale interaction and nutrient exchange between surface water and shallow groundwater in the Baiyang Lake region,North China Plain显示文摘Fertilizer input for agricultural food production, as well as the discharge of domestic and industrial water pollutants, increases pressures on locally scarce and vulnerable water resources in the North China Plain. In order to:(a) understand pollutant exchange between surface water and groundwater,(b) quantify nutrient loadings, and(c) identify major nutrient removal pathways by using qualitative and quantitative methods, including the geochemical model PHREEQC) a one-year study at a wheat(Triticum aestivum L.) and maize(Zea mays L.) double cropping system in the Baiyang Lake area in Hebei Province, China, was undertaken. The study showed a high influence of low-quality surface water on the shallow aquifer. Major inflowing pollutants into the aquifer were ammonium and nitrate via inflow from the adjacent Fu River(up to 29.8 mg/L NH4-N and 6.8 mg/L NO3-N), as well as nitrate via vertical transport from the field surface(up to 134.8 mg/L NO3-N in soil water). Results from a conceptual model show an excess nitrogen input of about 320 kg/ha/a. Nevertheless,both nitrogen species were only detected at low concentrations in shallow groundwater,averaging at 3.6 mg/L NH4-N and 1.8 mg/L NO3-N. Measurement results supported by PHREEQC-modeling indicated cation exchange, denitrification, and anaerobic ammonium oxidation coupled with partial denitrification as major nitrogen removal pathways. Despite the current removal capacity, the excessive nitrogen fertilization may pose a future threat to groundwater quality. Surface water quality improvements are therefore recommended in conjunction with simultaneous monitoring of nitrate in the aquifer, and reduced agricultural N-inputs should be considered. | Bentje Brauns Poul L.Bjerg Xianfang Song Rasmus Jakobsen | 2016 | Journal of Environmental Sciences2016，28，7： | 6 |
| 4 | Species diversity,population structure and regeneration of woody species in fallows and mature stands of tropical woodlands of southeast Angola显示文摘This study in the dry tropical woodlands of SE Angola in Cuando-Cubango Province assessed the diversity and composition of woody species in fallows compared to those in mature woodlands. We assessed the population structure of the most harvested woody species by calculating size class distribution and evaluated their regeneration potential based on the density of saplings. The vegetation was surveyed in 20 plots of 20 × 50 m(1000 m2). In each plot, we measured the diameter at breast height(DBH) of all woody species with DBH ≥ 5 cm. The saplings were counted, identified and recorded; 718 individuals, corresponding to 34 species in 32 genera and 15 families were recorded. The size class distribution of target woody species showed three different patterns in fallows and mature woodlands. In general,most of the smaller diameter classes had more individuals than the larger ones did, showing that the regeneration may take place. However, in some diameter classes, the absence of larger stems indicated selective logging of larger trees. Few saplings were recorded in the fallows or mature woodlands; fire frequency and intensity is probably the main obstacle for seed germination and seedling survival rates in the studied area. | Francisco M.P.Goncalves Rasmus Revermann Manuel J.Cachissapa Amandio L.Gomes Marcos P.M.Aidar | 2018 | Journal of Forestry Research2018，29，6： | 5 |
| 5 | Mapping forest age using National Forest Inventory,airborne laser scanning,and Sentinel-2 data显示文摘Background:The age of forest stands is critical information for forest management and conservation,for example for growth modelling,timing of management activities and harvesting,or decisions about protection areas.However,area-wide information about forest stand age often does not exist.In this study,we developed regression models for large-scale area-wide prediction of age in Norwegian forests.For model development we used more than 4800 plots of the Norwegian National Forest Inventory(NFI)distributed over Norway between latitudes 58°and 65°N in an 18.2 Mha study area.Predictor variables were based on airborne laser scanning(ALS),Sentinel-2,and existing public map data.We performed model validation on an independent data set consisting of 63 spruce stands with known age.Results:The best modelling strategy was to fit independent linear regression models to each observed site index(SI)level and using a SI prediction map in the application of the models.The most important predictor variable was an upper percentile of the ALS heights,and root mean squared errors(RMSEs)ranged between 3 and 31 years(6%to 26%)for SI-specific models,and 21 years(25%)on average.Mean deviance(MD)ranged between^(−1) and 3 years.The models improved with increasing SI and the RMSEs were largest for low SI stands older than 100 years.Using a mapped SI,which is required for practical applications,RMSE and MD on plot level ranged from 19 to 56 years(29%to 53%),and 5 to 37 years(5%to 31%),respectively.For the validation stands,the RMSE and MD were 12(22%)and 2 years(3%),respectively.Conclusions:Tree height estimated from airborne laser scanning and predicted site index were the most important variables in the models describing age.Overall,we obtained good results,especially for stands with high SI.The models could be considered for practical applications,although we see considerable potential for improvements if better SI maps were available. | Johannes Schumacher Marius Hauglin Rasmus Astrup Johannes Breidenbach | 2020 | Forest Ecosystems2020，7，4： | 3 |
| 6 | Comparison of Osteoprotegerin to Traditional Atherosclerotic Risk Factors and High-Sensitivity C-Reactive Protein for Diagnosis of Atherosclerosis显示文摘 | Rasmus Mogelvang Sune H. Pedersen Allan Flyvbjerg Mette Bjerre Allan Z. Iversen Soren Galatius Jan Frystyk Jan S. Jensen | 2012 | The American Journal of Cardiology2012，，4： | 3 |
| 7 | Modes of genetic adaptations underlying functional innovations in the rumen显示文摘The rumen is the hallmark organ of ruminants and hosts a diverse ecosystem of microorganisms that facilitates efficient digestion of plant fibers.We analyzed 897 transcriptomes from three Cetartiodactyla lineages:ruminants,camels and cetaceans,as well as data from ruminant comparative genomics and functional assays to explore the genetic basis of rumen functional innovations.We identified genes with relatively high expression in the rumen,of which many appeared to be recruited from other tissues.These genes show functional enrichment in ketone body metabolism,regulation of microbial community,and epithelium absorption,which are the most prominent biological processes involved in rumen innovations.Several modes of genetic change underlying rumen functional innovations were uncovered,including coding mutations,genes newly evolved,and changes of regulatory elements.We validated that the key ketogenesis rate-limiting gene(HMGCS2)with five ruminant-specific mutations was under positive selection and exhibits higher synthesis activity than those of other mammals.Two newly evolved genes(LYZ1 and DEFB1)are resistant to Gram-positive bacteria and thereby may regulate microbial community equilibrium.Furthermore,we confirmed that the changes of regulatory elements accounted for the majority of rumen gene recruitment.These results greatly improve our understanding of rumen evolution and organ evo-devo in general. | Xiangyu Pan Yudong Cai Zongjun Li Xianqing Chen Rasmus Heller Nini Wang Yu Wang Chen Zhao Yong Wang Han Xu Songhai Li Ming Li Cunyuan Li Shengwei Hu Hui Li Kun Wang Lei Chen Bin Wei Zhuqing Zheng Weiwei Fu Yue Yang Tingting Zhang Zhuoting Hou Yueyang Yan Xiaoyang Lv Wei Sun Xinyu Li Shisheng Huang Lixiang Liu Shengyong Mao Wenqing Liu Jinlian Hua Zhipeng Li Guojie Zhang Yulin Chen Xihong Wang Qiang Qiu Brian PDalrymple Wen Wang Yu Jiang | 2021 | Science China(Life Sciences)2021，64，1： | 3 |
| 8 | Automatic Detection of Lung Nodules Using 3D Deep Convolutional Neural Networks显示文摘Lung cancer is the leading cause of cancer deaths worldwide. Accurate early diagnosis is critical in increasing the 5-year survival rate of lung cancer, so the efficient and accurate detection of lung nodules,the potential precursors to lung cancer, is paramount. In this paper, a computer-aided lung nodule detection system using 3D deep convolutional neural networks(CNNs) is developed. The first multi-scale 11-layer 3D fully convolutional neural network(FCN) is used for screening all lung nodule candidates. Considering relative small sizes of lung nodules and limited memory, the input of the FCN consists of 3D image patches rather than of whole images. The candidates are further classified in the second CNN to get the final result. The proposed method achieves high performance in the LUNA16 challenge and demonstrates the effectiveness of using 3D deep CNNs for lung nodule detection. | 傅玲 马璟琛 陈奕志 LARSSON Rasmus 赵俊 | 2019 | Journal of Shanghai Jiaotong university(Science)2019，24，4： | 2 |
| 9 | 一把椅子抵住这时间的洪流显示文摘关于人与物是如何互相影响的,我想一把汉斯·瓦格纳(HANS J.WEGNER)的椅子便能说明这两者间全部的关系。 | msright PP M?bler Mikkel Adsb?l Jens Mourits S?rensen Erik Brahl Rasmus Koch Studio Katja Kejser Kasper Holst Pedersen | 2015 | 设计2015，28，22： | 2 |
| 10 | Nature:利用CRISPR/Cas9治疗镰状细胞疾病取得重大进展显示文摘在一项新的研究中,来自美国斯坦福大学医学院的研究人员利用一种被称作CRISPR/Cas9的基因编辑工具修复人干细胞中导致镰状细胞疾病的基因。这是开发一种治疗这种疾病的基因疗法的关键一步。相关研究结果在线发表在Nature期刊上。 | Daniel P. Dever, Rasmus O. Bak, Joab Camarena, Gabriel Washington, Carmencita E. Nicolas, Mara Pavel-Dinu, Nivi Saxena, Alec B. Wilkens, Sruthi Mantri, Ayal Hendel, Kenneth I. Weinberg Matthew H. Porteus Andreas Reinisch Ravindra Majeti Nobuko Uchida Anupama Narla | 2016 | 现代生物医学进展2016，16，35： | 2 |
| 11 | A modified Anderson-Wilkins electrocardiographic acuteness score for anterior or inferior myocardial infarction显示文摘 | Bo H Rasmus R Eva P | 2003 | Am Heart J2003，146，5： | 1 |
| 12 | Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models显示文摘 | YANG Z RASMUS N | 2000 | Molecular Biology and Evolution2000，17，1： | 1 |
| 13 | swallow-related cerebra cortical activity maps are not specific to deglutition显示文摘 | Rasmus B Jaradeh S | 2001 | Am J Physiol Gasrointest Liver Physiol2001，280，： | 1 |
| 14 | A variable cementation exponent,m,or carbonate pore systems显示文摘 | Rasmus J C | 1983 | The Log Analyst1983，24，6： | 1 |
| 15 | A variable cementation exponent m of carbonate pore systems 显示文摘 | RASMUS J C | 1983 | The Log Analyst1983，24，6： | 1 |
| 16 | Tissue levels of tumor necrosis factor-alpha correlates with grade of inflammation in untreated ulcerative colitis显示文摘 | Trine Olsen Rasmus Goll Cui Guang-lin | 2007 | Scandinavian Journal of Gastroenterology2007，42，11： | 1 |
| 17 | E- valuation of Modis LAI and the relation between APAR and NDVI in a semi - arid environment using situ measurements显示文摘 | Rasmus Fenshoh Inge Sandholt Michael Schuhz Rasmussen | 2004 | Remote Sensing of Environment2004，91，： | 1 |
| 18 | 查看详情显示文摘 | Christopher A S Rasmus H Arfa R.M Warwick B D Gillian M S Royston G Alan J D | | 0，，01： | 1 |
| 19 | Mucosal cytokine gene expression profiles as biomarkers of response to infliximab in ulcerative colitis显示文摘 | Renathe Rismo Trine Olsen Guanglin Cui Ingrid Christiansen Jon Florholmen Rasmus Goll | 2012 | Scandinavian Journal of Gastroenterology2012，，5： | 1 |
| 20 | Carbon Lock-in,Rebound Effects and China at the Limits of Statism显示文摘 | Rasmus Karlsson | 2012 | Energy Policy2012，，51： | 1 |
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