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| 1 | FAIR Principles:Interpretations and Implementation Considerations显示文摘The FAIR principles have been widely cited,endorsed and adopted by a broad range of stakeholders since their publication in 2016.By intention,the 15 FAIR guiding principles do not dictate specific technological implementations,but provide guidance for improving Findability,Accessibility,Interoperability and Reusability of digital resources.This has likely contributed to the broad adoption of the FAIR principles,because individual stakeholder communities can implement their own FAIR solutions.However,it has also resulted in inconsistent interpretations that carry the risk of leading to incompatible implementations.Thus,while the FAIR principles are formulated on a high level and may be interpreted and implemented in different ways,for true interoperability we need to support convergence in implementation choices that are widely accessible and(re)-usable.We introduce the concept of FAIR implementation considerations to assist accelerated global participation and convergence towards accessible,robust,widespread and consistent FAIR implementations.Any self-identified stakeholder community may either choose to reuse solutions from existing implementations,or when they spot a gap,accept the challenge to create the needed solution,which,ideally,can be used again by other communities in the future.Here,we provide interpretations and implementation considerations(choices and challenges)for each FAIR principle. | Annika Jacobsen Ricardo de Miranda Azevedo Nick Juty Dominique Batista Simon Coles Ronald Cornet Melanie Courtot Merce Crosas Michel Dumontier Chris T.Evelo Carole Goble Giancarlo Guizzardi Karsten Kryger Hansen Ali Hasnain Kristina Hettne Jaap Heringa Rob W.W.Hooft Melanie Imming Keith G.Jeffery Rajaram Kaliyaperumal Martijn GKersloot Christine R.Kirkpatrick Tobias Kuhn Ignasi Labastida Barbara Magagna PeterMcQuilton Natalie Meyers Annalisa Montesanti Mirjam van Reisen Philippe Rocca-Serra Robert Pergl Susanna-Assunta Sansone Luiz Olavo Bonino da Silva Santos Juliane Schneider George Strawn Mark Thompson Andra Waagmeester Tobias Weigel Mark D.Wilkinson Egon L.Willighagen Peter Wittenburg Marco Roos Barend Mons Erik Schultes | 2020 | Data Intelligence2020，2，1： | 26 |
| 2 | Potentially dangerous glacial lakes across the Tibetan Plateau revealed using a large-scale automated assessment approach显示文摘Glacial lake outburst floods(GLOFs) are a major concern in the Himalaya and on the Tibetan Plateau(TP),where several disasters occurring over the past century have caused significant loss of life and damage to infrastructure. This study responds directly to the needs of local authorities to provide guidance on the most dangerous glacial lakes across TP where local monitoring and other risk reduction strategies can subsequently be targeted. Specifically, the study aims to establish a first comprehensive prioritisation ranking of lake danger for TP, considering both the likelihood and possible magnitude of any outburst event(hazard), and the exposure of downstream communities. A composite inventory of 1,291 glacial lakes(>0.1 km^2) was derived from recent remote sensing studies, and a fully automated and object assessment scheme was implemented using customised GIS tools. Based on four core determinates of GLOF hazard(lake size, watershed area, topographic potential for ice/rock avalanching, and dam steepness), the scheme accurately distinguishes the high to very high hazard level of 19 out of 20 lakes that have previously generated GLOFs. Notably, 16% of all glacial lakes threaten human settlements, with a hotspot of GLOF danger identified in the central Himalayan counties of Jilong, Nyalam, and Dingri, where the potential trans-boundary threat to communities located downstream in Nepal is also recognised. The results provide an important and object scientific basis for decision-making, and the methodological approach is ideally suited for replication across other mountainous regions where such first-order studies are lacking. | Simon Keith Allen Guoqing Zhang Weicai Wang TANDong Yao Tobias Bolch | 2019 | Science Bulletin2019，64，7： | 20 |
| 3 | Crosstalk Complexities between Auxin, Cytokinin, and Ethylene in Arabidopsis Root Development: From Experiments to Systems Modeling, and Back Again显示文摘理解荷尔蒙和基因怎么交往在变化环境协调植物生长是在植物的主要挑战发展生物学。植物生长素,细胞激动素,和乙烯是调整植物开发的许多方面的三重要荷尔蒙。这评论极其在 Arabidopsis 根开发评估在三荷尔蒙之间的串音。我们把许多试验性的数据集成到一个串音网络,它在植物生长素,细胞激动素,和乙烯串音揭示复杂性的多重层。特别地,数据集成揭示在乙烯和细胞激动素小径之间的一个另外的、大部分俯看的连接,它通过 phosphorelay 机制行动。这个建议连接探讨乙烯申请是否支持或禁止乙烯受体的受体 kinase 活动的突出的问题。阐明在植物生长素,细胞激动素,和乙烯串音的复杂性要求一联合试验性并且系统建模途径。我们为证实在植物生长素,细胞激动素,和乙烯之间的串音怎么在根开发调整 patterning 评估重要当模特儿的努力。我们讨论反复地把实验与为分析建模的系统相结合的新奇方法论怎么为阐明是必要的在在根开发的植物生长素,细胞激动素,和乙烯的串音的复杂性。最后,我们讨论未来挑战从一联合试验性、建模的观点。 | Junli Liu Simon Moore Chunli Chen Keith Lindsey | 2017 | Molecular Plant2017，10，12： | 8 |
| 4 | 牧草细胞壁:瘤胃内降解(英文)显示文摘牧草细胞壁在瘤胃内降解主要是瘤胃微生物起作用。本综述概略地介绍了牧草细胞壁降解所涉及的以细菌为主的微生物,细胞壁多糖分解所需的酶,细胞壁降解模型以及细胞壁降解的限制因素。 | 孙学钊 Simone O. Hoskin Keith N. Joblin Ian G. Andrew Philip J. Harris 盛亦兵 | 2007 | 草地学报2007，15，4： | 5 |
| 5 | A deep convolutional neural network for real-time full profile analysis of big powder diffraction data显示文摘We present Parameter Quantification Network(PQ-Net),a regression deep convolutional neural network providing quantitative analysis of powder X-ray diffraction patterns from multi-phase systems.The network is tested against simulated and experimental datasets of increasing complexity with the last one being an X-ray diffraction computed tomography dataset of a multi-phase Ni-Pd/CeO_(2)-ZrO_(2)/Al_(2)O_(3) catalytic material system consisting of ca.20,000 diffraction patterns.It is shown that the network predicts accurate scale factor,lattice parameter and crystallite size maps for all phases,which are comparable to those obtained through full profile analysis using the Rietveld method,also providing a reliable uncertainty measure on the results.The main advantage of PQNet is its ability to yield these results orders of magnitude faster showing its potential as a tool for real-time diffraction data analysis during in situ/operando experiments. | Hongyang Dong Keith T.Butler Dorota Matras Stephen W.T.Price Yaroslav Odarchenko Rahul Khatry Andrew Thompson Vesna Middelkoop Simon D.M.Jacques Andrew M.Beale Antonis Vamvakeros | 2021 | npj Computational Materials2021，，1： | 5 |
| 6 | 光动力疗法治疗非小细胞肺癌显示文摘光动力疗法被越来越多地应用于治疗胸部恶性肿瘤。对于早期非小细胞肺癌(如支气管腔内肺癌)、X线检查阴性或同时性原发癌,光动疗法可作为主要治疗手段进行腔内根治性治疗。作为单一根治疗法,光动力疗法是治疗支气管镜可见≤1 cm且无软骨外浸润的肺部肿瘤的最有效方法。对于晚期非小细胞癌患者,光动力治疗可以作为综合根治疗法的一部分,用于减轻阻塞性支气管内病变,增加可手术性或缩小所需手术范围。本文对现有发表的应用光动力疗法治疗至少10例以上非小细胞肺癌病例的研究文献进行综述,提出了光动力疗法应用的治疗建议并进行了总结。 | Charles B Simone II Joseph S Friedberg Eli Glatstein James P Stevenson Daniel H Sterman Stephen M Hahn Keith A Cengel 袁光金 李金銮 朱宇熹 凌扬 | 2013 | 国际病理科学与临床杂志2013，33，3： | 3 |
| 7 | Hypoxia-Inducible Factors, Stem Cells, and Cancer显示文摘 | Brian Keith M. Celeste Simon | 2007 | Cell2007，，3： | 2 |
| 8 | Relative importance of enterochromaffin cell hyperplasia, anxiety, and depression in postinfectious IBS显示文摘 | Simon P Dunlop David Jenkins Keith R Neal Robin C Spiller | 2003 | Gastroenterology2003，，6： | 2 |
| 9 | relative importance of enterochromaffin cell hyperplasia, anxiety, and depression in postinfectious ibs 显示文摘 | simon p dunlop davaid jenkins keith rneal | 2003 | gastroenterlogy2003，125，6： | 1 |
| 10 | Hypoxia-inducible Factors, Stem cells, and cancer显示文摘 | KEITH B SIMON MC | 2007 | Cell2007，129，3： | 1 |
| 11 | Targeted replacement of hypoxiainducible factor-lalpha by a hypoxia-inducible factor-2alpha knockin allele promotes tumor growth显示文摘 | Covello KL Simon MC Keith B | 2005 | Cancer Res2005，65，6： | 1 |
| 12 | The role of oxygen availability in em- bryonic development and stem cell function显示文摘 | Simon M C Keith B | 2008 | Nat Rev2008，9，： | 1 |
| 13 | Effect of salt and water balance on recovery of gastrointestinal function after elective colonic resection: a randomised controlled trial显示文摘 | Dileep N Lobo Kate A Bostock Keith R Neal Alan C Perkins Brain J Rowlands Simon P Allison | 2002 | The Lancet . 2002 (9320)2002，，9320： | 1 |
| 14 | SAHA attenuates Takotsubo-like myocardial injury by targeting an epigenetic Ac/Dc axis显示文摘Dear Editor,Takotsubo syndrome(TS)is a stress-induced non-ischaemic cardiomyopathy that is more common in women,but is associated with higher morbidity and mortality in males.Also known as broken-heart syndrome,TS is characterised by transient left ventricular(LV)dysfunction independent of obstructive coronary artery disease.TS is a polygenic condition and nowhere is this more evident than the use of positive inotropes,such as isoprenaline(ISO)in pre-clinical models.1 There is no standard therapy for broken-heart syndrome because the mechanisms underlying the condition remain unknown.Furthermore,there is no consensus on predisposition for Takotsubo2 and our goal was to better understand the regulatory mechanism as a first step towards improved treatment plans.Suberanilohydroxamic acid or SAHA,a drug approved for cancer treatment by the US Food and Drug Administration has previously been shown to improve cardiopulmonary function.3 We tested the hypothesis that the cardioprotective benefit of SAHA in a pre-clinical model of Takotsubo is conferred by an epigenetic acetylation/deacetylation(Ac/Dc)axis. | Ishant Khurana Scott Maxwell Simon Royce Prabhu Mathiyalagan Tom Karagiannis Nadia Mazarakis Jitraporn Vongsvivut Harikrishnan K.N. Jun Okabe Keith Al-Hasani Chrishan Samuel Assam El-Osta | 2021 | Signal Transduction and Targeted Therapy2021，6，5： | 1 |
| 15 | Targeted mutation of the murine arylhydrocarbon receptor nuclear transloca- tor 2 (Arnt2) gene reveals partial redundancy with Arnt 显示文摘 | Keith B Adelman DM Simon MC | 2001 | Proc Natl Acad Sci USA2001，98，12： | 1 |
| 16 | HIFlalpha and HIF2alpha: sibling rivalry inhypoxic turnout growth and progression显示文摘 | Keith B Johnson RS Simon MC | 2012 | Nat Rev Cancer2012，12，6： | 1 |
| 17 | HIF1 alpha and HIF2 alpha:Sib- ling rivalry in hypoxic tumour growth and progression 显示文摘 | Keith B Johnson IRS Simon MC | 2012 | NatureReviews Cancer2012，12，1： | 1 |
| 18 | Differential roles of hypoxia-inducible factor 1α (HIF-1α) and HIF-2α in hypoxic gene regulation显示文摘 | Hu C J Wang L Y Chodosh L A Keith B Simon M C | 2003 | Mol Cell Biol2003，23，： | 1 |
| 19 | Hypoxia-inducible factors, stem cells, and cancer显示文摘 | KEITH B SIMON M C | 2007 | Cell2007，129，： | 1 |
| 20 | Hypoxia-Inducible Factors, Stem Cells, and Cancer显示文摘 | Keith B Simon MC | 2007 | Cell2007，129，3： | 1 |
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