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| 1 | m^6A mRNA methylation sustains Treg suppressive functions显示文摘 | Jiyu Tong Guangchao Cao Ting Zhang Esen Sefik Maria Carolina Amezcua Vesely James P Broughton Shu Zhu Huabin Li Bin Li Lei Chen Howard Y Chang Bing Su Richard A Flavell Hua-Bing Li | 2018 | Cell Research2018，28，2： | 30 |
| 2 | Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield显示文摘Artemisia annua is the major natural source of artemisinin,an anti-malarial medicine commonly used worldwide.Here,we present chromosome-level haploid maps for two A.annua strains with different artemisinin contents to explore the relationships between genomic organization and artemisinin production.High-fidelity sequencing,optical mapping,and chromatin conformation capture sequencing were used to assemble the heterogeneous and repetitive genome and resolve the haplotypes of A.annua.Approximately 5o,ooo genes were annotated for each haplotype genome,and a triplication event that occurred approximately 58.12million years ago was examined for the first time in this species.A total of 3,903,467-5,193,414 variants(SNPs,indels,and structural variants)were identified in the 1.5-Gb genome during pairwise comparison between haplotypes,consistent with the high heterozygosity of this species.Genomic analyses revealed a correlation between artemisinin concents and the copy number of amorpha-4,11-dienes ynthasegenes.This correlation was further confirmed by resequencing of 36A.annua samples with varied artemisinin contents.Circular consensus sequencing of transcripts facilitated the detection of paralog expression.Collectively,our study provides chromosome-level allele-aware genome assemblies for two A.annua strains and new insights into the biosynthesis of artemisinin and its regulation,which will contribute to conquering malaria worldwide. | Baosheng Liao Xiaofeng Shen Li Xiang Shuai Guo Shiyu Chen Ying Meng Yu Liang Dandan Ding Junqi Bai Dong Zhang Tomasz Czechowski Yi Li Hui Yao Tingyu Mai Caroline Howard Chao Sun Haitao Liu Jiushi Liu Jin Pei Jihai Gao Jigang Wang Xiaohui Qiu Zhihai Huang Hongyi Li Ling Yuan Jianhe Wei lan Graham Jiang Xu Boli Zhang Shilin Chen | 2022 | Molecular Plant2022，15，8： | 9 |
| 3 | Elucidation of the ‘Honeycrisp’ pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data set显示文摘The apple(Malus×domestica)cultivar Honeycrisp has become important economically and as a breeding parent.An earlier study with SSR markers indicated the original recorded pedigree of‘Honeycrisp’was incorrect and‘Keepsake’was identified as one putative parent,the other being unknown.The objective of this study was to verify‘Keepsake’as a parent and identify and genetically describe the unknown parent and its grandparents.A multi-family based dense and high-quality integrated SNP map was created using the apple 8 K Illumina Infinium SNP array.This map was used alongside a large pedigree-connected data set from the RosBREED project to build extended SNP haplotypes and to identify pedigree relationships.‘Keepsake’was verified as one parent of‘Honeycrisp’and‘Duchess of Oldenburg’and‘Golden Delicious’were identified as grandparents through the unknown parent.Following this finding,siblings of‘Honeycrisp’were identified using the SNP data.Breeding records from several of these siblings suggested that the previously unreported parent is a University of Minnesota selection,MN1627.This selection is no longer available,but now is genetically described through imputed SNP haplotypes.We also present the mosaic grandparental composition of‘Honeycrisp’for each of its 17 chromosome pairs.This new pedigree and genetic information will be useful in future pedigree-based genetic studies to connect‘Honeycrisp’with other cultivars used widely in apple breeding programs.The created SNP linkage map will benefit future research using the data from the Illumina apple 8 and 20 K and Affymetrix 480 K SNP arrays. | Nicholas P Howard Eric van de Weg David S Bedford Cameron P Peace Stijn Vanderzande Matthew D Clark Soon Li Teh Lichun Cai James J Luby | 2017 | Horticulture Research2017，4，1： | 9 |
| 4 | Arabidopsis Extra Large G-Protein 2 (XLG2) Interacts with the Gβ Subunit of Heterotrimeric G Protein and Functions in Disease Resistance显示文摘Heterotrimeric GTP 有约束力的蛋白质,由 G, G,和 G 子单元组成,在细胞外的信号由房间表面受体察觉了进细胞内部的生理的回答的 transducing 起重要作用。除了单个原型的 G 蛋白质(GPA1 ) , Arabidopsis 有三唯一的象 G 一样蛋白质,作为 XLG1, XLG2,和 XLG3 知道,那被发现了在原子核局部性,尽管他们行动的功能和模式仍然保持大部分未知。通过 transcriptomic 分析,我们发现 XLG2 和 XLG3 被感染很快与细菌的病原体 Pseudomonas syringae 导致,而 XLG1 抄本水平没被病原体感染影响。一幅反向的基因屏幕表明 xlg2 loss-of-function 变化原因提高了危险性到 P。syringae。介绍的 Transcriptome 表明 xlg2 变化影响防卫相关的基因的一个小集合的被触发病原体的正式就职。然而, xlg1 和 xlg3 异种没在抵抗从野类型的植物显示出差别到 P。syringae。另外, xlg2 xlg3 两倍异种和 xlg1 xlg2 xlg3 三元组异种不与在疾病抵抗显型的 xlg2 单身者异种显著地不同,建议如果有的话,在防卫的 XLG1 和 XLG3 的角色不比为 XLG2 重要。XLG2 的组成的 overexpression 从多重防卫相关的基因导致反常抄本的累积。通过 co-immunoprecipitation 试金, XLG2 被发现与 AGB1 交往,在 Arabidopsis 的唯一的 G 子单元,它以前被发现了是在到 necrotrophic 的抵抗的一个积极管理者真菌的病原体。然而,没有重要差别在三 xlg 单身者异种之间被发现, xlg2 xlg3 在到 necrotrophic 的抵抗的两倍异种, xlg 三元组异种,和野类型的植物真菌的病原体 Botrytis cinerea 或 Alternaria brassicicola。这些结果建议 XLG2 和 AGB1 是与原型的 heterotrimeric G 蛋白质不同的 G 蛋白质建筑群的部件并且可以在 modulating 防卫回答有不同功能。 | Huifen Zhu Guo-Jing Li Lei Ding Xiangqin Cui Howard Berg Sarah M. Assmann Yiji Xia | 2009 | Molecular Plant2009，2，3： | 8 |
| 5 | Tyrosine aminotransferase: biochemical and structural properties and molecular dynamics simulations显示文摘Tyrosine aminotransferase(TAT)catalyzes the transamination of tyrosine and other aromatic amino acids.The enzyme is thought to play a role in tyrosinemia type II,hepatitis and hepatic carcinoma recovery.The objective of this study is to investigate its biochemical and structural characteristics and substrate specificity in order to provide insight regarding its involvement in these diseases.Mouse TAT(mTAT)was cloned from a mouse cDNA library,and its recombinant protein was produced using Escherichia coli cells and purified using various chromatographic techniques.The recombinant mTAT is able to catalyze the transamination of tyrosine usingα-ketoglutaric acid as an amino group acceptor at neutral pH.The enzyme also can use glutamate and phenylalanine as amino group donors and p-hydroxyphenylpyruvate,phenylpyruvate and alpha-ketocaproic acid as amino group acceptors.Through macromolecular crystallography we have determined the mTAT crystal structure at 2.9Åresolution.The crystal structure revealed the interaction between the pyridoxal-5′-phosphate cofactor and the enzyme,as well as the formation of a disulphide bond.The detection of disulphide bond provides some rational explanation regarding previously observed TAT inactivation under oxidative conditions and reactivation of the inactive TAT in the presence of a reducing agent.Molecular dynamics simulations using the crystal structures of Trypanosoma cruzi TAT and human TAT provided further insight regarding the substrate-enzyme interactions and substrate specificity.The biochemical and structural properties of TAT and the binding of its cofactor and the substrate may help in elucidation of the mechanism of TAT inhibition and activation. | Prajwalini Mehere Qian Han Justin A.Lemkul Christopher J.Vavricka Howard Robinson David R.Bevan Jianyong Li | 2010 | Protein & Cell2010，1，11： | 4 |
| 6 | Neoadjuvant therapy in pancreatic adenocarcinoma: A meta-analysis of phase II trials显示文摘 | M. Mura Assifi Xuyang Lu Guido Eibl Howard A. Reber Gang Li O. Joe Hines | 2011 | Surgery2011，，3： | 3 |
| 7 | Community-level trait responses and intra-specific trait variability play important roles in driving community productivity in an alpine meadow on the Tibetan Plateau显示文摘Aims Human activities have dramatically increased nutrient inputs to ecosys-tems,impacting plant community diversity,composition and function-ing.Extensive research has shown that a decrease in species diversity and an increase in productivity are a common phenomenon following fertilization in grasslands ecosystem.The magnitude of the response of species diversity and above-ground net primary productivity(ANPP)to fertilization mainly depends on species traits(mean trait values)and traits variability(plasticity).Our aim of this study was to examine(i)changes of species diversity(species richness and Shannon-Wiener index)and ANPP following fertilization;(ii)which species traits or community-weighted mean(CWM)traits can determine ANPP,as expected from the‘biomass ratio hypothesis’;and(iii)the relative role of intra-specific and inter-specific trait variability in this process following fertilization.Methods We measured ANPP and four key plant functional traits:specific leaf area(SLA),leaf dry matter content(LDMC),mature plant height(MPH)and leaf nitrogen concentration(LNC)for 25 component species along a fertilization gradient in an alpine meadow on the Tibetan Plateau.In addition,trait variation of species was assessed using coefficients of variation(CV),and we calculated the ratio of the CVintra to the CVinter.Important Findings Our results showed that:(i)fertilization significantly reduced species richness and Shannon-Weiner diversity index,but sig-nificantly increased ANPP;(ii)there was a significant positive correlation between ANPP and CWM-SLA and CWM-MPH,yet there was no significant relationship between ANPP and CWM-LNC or CWM-LDMC;(iii)intra-specific variability in SLA and MPH was found to be much greater than inter-specific variability,especially at the higher fertilization levels.We con-cluded that CWM-SLA and CWM-MPH can be used to assess the impacts of species changes on ecosystem functioning,and dominant species can maximize resource use through intra-spe-cific variability in SLA and MPH to compensate for the loss of species following fertilization,therefore maintaining high com-munity productivity. | Wei Li Jie Zhao Howard E.Epstein Guanghua Jing Jimin Cheng Guozhen Du | 2017 | Journal of Plant Ecology2017，10，4： | 3 |
| 8 | Concrete Defects Inspection and 3D Mapping Using City Flyer Quadrotor Robot显示文摘The concrete aging problem has gained more attention in recent years as more bridges and tunnels in the United States lack proper maintenance. Though the Federal Highway Administration requires these public concrete structures to be inspected regularly, on-site manual inspection by human operators is time-consuming and labor-intensive. Conventional inspection approaches for concrete inspection, using RGB imagebased thresholding methods, are not able to determine metric information as well as accurate location information for assessed defects for conditions. To address this challenge, we propose a deep neural network(DNN) based concrete inspection system using a quadrotor flying robot(referred to as City Flyer) mounted with an RGB-D camera. The inspection system introduces several novel modules. Firstly, a visual-inertial fusion approach is introduced to perform camera and robot positioning and structure 3 D metric reconstruction. The reconstructed map is used to retrieve the location and metric information of the defects.Secondly, we introduce a DNN model, namely Ada Net, to detect concrete spalling and cracking, with the capability of maintaining robustness under various distances between the camera and concrete surface. In order to train the model, we craft a new dataset, i.e., the concrete structure spalling and cracking(CSSC)dataset, which is released publicly to the research community.Finally, we introduce a 3 D semantic mapping method using the annotated framework to reconstruct the concrete structure for visualization. We performed comparative studies and demonstrated that our Ada Net can achieve 8.41% higher detection accuracy than Res Nets and VGGs. Moreover, we conducted five field tests, of which three are manual hand-held tests and two are drone-based field tests. These results indicate that our system is capable of performing metric field inspection,and can serve as an effective tool for civil engineers. | Liang Yang Bing Li Wei Li Howard Brand Biao Jiang Jizhong Xiao | 2020 | IEEE/CAA Journal of Automatica Sinica2020，7，4： | 3 |
| 9 | Aberrant cholesterol metabolic signaling impairs antitumor immunosurveillance through natural killer T cell dysfunction in obese liver显示文摘Obesity is a major risk factor for cancers including hepatocellular carcinoma(HCC)that develops from a background of non-alcoholic fatty liver disease(NAFLD).Hypercholesterolemia is a common comorbidity of obesity.Although cholesterol biosynthesis mainly occurs in the liver,its role in HCC development of obese people remains obscure.Using high-fat high-carbohydrate diet-associated orthotopic and spontaneous NAFLD-HCC mouse models,we found that hepatic cholesterol accumulation in obesity selectively suppressed natural killer T(NKT)cell-mediated antitumor immunosurveillance.Transcriptome analysis of human liver revealed aberrant cholesterol metabolism and NKT cell dysfunction in NAFLD patients.Notably,cholesterol-lowering rosuvastatin restored NKT expansion and cytotoxicity to prevent obesogenic diet-promoted HCC development.Moreover,suppression of hepatic cholesterol biosynthesis by a mammalian target of rapamycin(mTOR)inhibitor vistusertib preceded tumor regression,which was abolished by NKT inactivation but not CD8^(+)T cell depletion.Mechanistically,sterol regulatory element-binding protein 2(SREBP2)-driven excessive cholesterol production from hepatocytes induced lipid peroxide accumulation and deficient cytotoxicity in NKT cells,which were supported by findings in people with obesity,NAFLD and NAFLD-HCC.This study highlights mTORC1/SREBP2/cholesterol-mediated NKT dysfunction in the tumor-promoting NAFLD liver microenvironment,providing intervention strategies that invigorating NKT cells to control HCC in the obesity epidemic. | Wenshu Tang Jingying Zhou Weiqin Yang Yu Feng Haoran Wu Myth T.S.Mok Lingyun Zhang Zhixian Liang Xiaoyu Liu Zhewen Xiong Xuezhen Zeng Jing Wang Jiahuan Lu Jingqing Li Hanyong Sun Xiaoyu Tian Philip Chun Yeung Yong Hou Heung Man Lee Candice C.H.Lam Howard H.W.Leung Anthony W.H.Chan Ka Fai To John Wong Paul B.S.Lai Kelvin K.C.Ng Simon K.H.Wong Vincent W.S.Wong Alice P.S.Kong Joseph J.Y.Sung Alfred S.L.Cheng | 2022 | Cellular & Molecular Immunology2022，19，7： | 3 |
| 10 | Exome Resequencing Identifies Potential Tumor‐Suppressor Genes that Predispose to Colorectal Cancer显示文摘 | Christopher G. Smith Marc Naven Rebecca Harris James Colley Hannah West Ning Li Yuan Liu Richard Adams Timothy S. Maughan Laura Nichols Richard Kaplan Michael J. Wagner Howard L. McLeod Jeremy P. Cheadle | 2013 | Human Mutation2013，，7： | 2 |
| 11 | Li-ion battery material under high pressure:amorphization and enhanced conductivity of Li_4Ti_5O_(12)显示文摘Lithium titanium oxide(Li_4Ti_5O_(12),LTO),a‘zero-strain’anode material for lithium-ion batteries,exhibits excellent cycling performance.However,its poor conductivity highly limits its applications.Here,the structural stability and conductivity of LTO were studied using in situ high-pressure measurements and first-principles calculations.LTO underwent a pressure-induced amorphization(PIA)at 26.9 GPa.The impedance spectroscopy revealed that the conductivity of LTO improved significantly after amorphization and that the conductivity of decompressed amorphous LTO increased by an order of magnitude compared with its starting phase.Furthermore,our calculations demonstrated that the different compressibility of the Li O_6 and Ti O_6 octahedra in the structure was crucial for the PIA.The amorphous phase promotes Li^+ diffusion and enhances its ionic conductivity by providing defects for ion migration.Our results not only provide an insight into the pressure depended structural properties of a spinel-like material,but also facilitate exploration of the interplay between PIA and conductivity. | Yanwei Huang Yu He Howard Sheng Xia Lu Haini Dong Sudeshna Samanta Hongliang Dong Xifeng Li Duck Young Kim Ho-kwang Mao Yuzi Liu Heping Li Hong Li Lin Wang | 2019 | National Science Review2019，6，2： | 2 |
| 12 | Bilirubin and bile acids may modulate their own metabolism via regulationg uridine diphosphate glucuronosylt ransferase expression in the rat显示文摘 | Li Y Q Prentice DA Howard ML | 2000 | J Gast roenterol Hepatol2000，15，8： | 1 |
| 13 | Bilirubin and bile acids may modulate their own metabolism via regulating uridine diphos- phate-glucuronosyltransferase expression in the rat 显示文摘 | Li YQ Prentice DA Howard ML | 2000 | J Gastroen- terol Hepatol2000，15，8： | 1 |
| 14 | Effects of Pulsed Electric Fields on the Activity and Structure of Pepsin显示文摘 | Yang Ruijin Li Si Quan Howard Zhang Q | 2004 | Journal of Agricultural and Food Chemistry2004，52，24： | 1 |
| 15 | Bilinrubin and bile acids may modulate their own metabolism via regulating uridine diphosphate-glucuronosyl-transferase expression in the rat 显示文摘 | Li YQ Prentice DA Howard ML | 2000 | Gastroenterol Hepatol2000，15，3： | 1 |
| 16 | Advances in the development of functional food from buckwheat显示文摘 | Si quan Li Q Howard Zhang | 2001 | Critical Reviews in Food Science and Nutrition2001，41，6： | 1 |
| 17 | New techniques for the grafting of culturea human epider- mal cells onto athymic animal 显示文摘 | Yann Barrandon Vincent Li Howard Green | 1988 | J Invest Derma- to11988，91，4： | 1 |
| 18 | Safety and efficacy of endovascular treatment of carotid atery stenosis compared with carotid endartereetomy, a Cochrane systematic review of the randomized evidenee显示文摘 | Howard Li Featherstone RL Brown MM | 2005 | Stroke2005，36，： | 1 |
| 19 | Finite dement analysis of non - local effects in ductile fracture 显示文摘 | HOWARD I C Li Z H | 2000 | Fatigue & Fracture of Engineering Materials & Structures2000，23，10： | 1 |
| 20 | Immunogenicity of DNA vaccines expressing tuberculosis proteins fused to tissue plasminogen activator signal sequences显示文摘 | Li Z Howard A Kelley C | 1999 | Infect lmmun1999，67，9： | 1 |
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