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| 1 | Deciphering codon usage patterns and evolutionary forces in chloroplast genes of Camellia sinensis var. assamica and Camellia sinensis var. sinensis in comparison to Camellia pubicosta显示文摘Codon usage bias(CUB) is a unique property of genome which refers to non-random usage of synonymous codons in coding sequences. The present study makes an attempt to find out the pattern of CUB in chloroplast(cp) genes among three tea species, i.e., Camellia sinensis var. assamica(Assam tea), Camellia sinensis var. sinensis(Chinese tea) and Camellia pubicosta(wild tea species) as no work on CUB was reported earlier. To understand the patterns of codon usage among the cp genes of three tea groups, we used bioinformatic tools to investigate the protein coding sequences of cp genes. In our present study, the mean nucleobase T was the highest whereas C was the lowest in all the three tea groups. The overall AT content was more than GC content, i.e., genes were AT rich. The scaled chi-square(SCS) value indicated that the CUB of cp genes was low. The codon CGT(Arg) was over-represented in C. sinensis var. sinensis whereas GGA(Pro) was over-represented in C. pubicosta species. Heatmap study revealed that most of the GC ending codons showed positive correlations between codon usage and GC3 while AT ending codons exhibited negative correlations. From neutrality plot analysis, it was evident that natural selection had played a major role, while mutation pressure exerted a minor effect in the CUB of cp genes in three tea groups. Highly significant(P<0.01) positive correlation was found between SCS and synonymous codon usage order(SCUO) of cp genes which suggested that high expression of cp genes was associated with high degree of CUB. | Sophiarani Yengkhom Arif Uddin Supriyo Chakraborty | 2019 | Journal of Integrative Agriculture2019，18，12： | 7 |
| 2 | Extraocular retinoblastoma in Indian children:clinical,imaging and histopathological features显示文摘AIM:To study eyes with extraocular dissemination(EORB),with the following aims:first to establish the mean lag period and to understand various reasons for delayed presentation,second to study their imaging profiles and third to analyze histopathological features of eyes enucleated after neoadjuvant chemotherapy.·METHODS:Prospective study of clinical and imaging features of EORBs(stage Ⅲ and Ⅳ International Retinoblastoma Staging System) presenting to a tertiary eye care centre.Histopathological features of eyes enucleated after receiving neoadjuvant chemotherapy were analyzed.A pictorial illustration of the varied imaging profile of EORB was also presented.·RESULTS:Over a period of one year,97 eyes were diagnosed with retinoblastoma;32 children(36 eyes)(37.1%) had EORB.Mean age 3.6±1.9 years,71.9% males,71.9% unilateral,3.1% with positive family history and40.6% with metastasis.On imaging,there was extrascleral involvement in 22.2%,involvement of orbital part of optic nerve in 33.3%,involvement of central nervous system in 27.8% and orbital wall involvement in2.9% eyes.On histopathological analysis of eyesenucleated after neoadjuvant chemotherapy,25.0% had no residual viable tumour tissue and rest all tumours were poorly differentiated.·CONCLUSION:There are very few human malignancies where definitive treatment is started without any confirmed histopathological diagnosis and imaging plays an important role in diagnosis and appropriate staging of the disease.Chemotherapy has a variable effect on EORB,75.0% of eyes with EORB had residual viable tumour tissue when enucleated after receiving neoadjuvant chemotherapy. | Sumita Sethi Neelam Pushker Seema Kashyap Sanjay Sharma Mridula Mehta Sameer Bakhshi Saurbhi Khurana Supriyo Ghose | 2013 | International Journal of Ophthalmology(English edition)2013，6，4： | 5 |
| 3 | LincRNA-p21 Suppresses Target mRNA Translation显示文摘 | Je-Hyun Yoon Kotb Abdelmohsen Subramanya Srikantan Xiaoling Yang Jennifer L. Martindale Supriyo De Maite Huarte Ming Zhan Kevin G. Becker Myriam Gorospe | 2012 | Molecular Cell2012，，4： | 2 |
| 4 | Evaluation of rapid molecular diagnostics for differentiating medicinal Kaempferia species from its adulterants显示文摘Accurate detection of unique herbs is crucial for herbal medicine preparation. Zingiberaceae species, which are important in Ayurvedic medicine of India, are often misidentified in Northeast (NE) Indian herbal markets. Kaempferia galanga (Zingiberaceae) is one of the major components of popular Ayurvedic drugs used for rheumatic diseases (i.e.,“Gandha Thailam” and “Rasnairandadi Kashayam”), contusions, fractures, and sprains. In NE India, herbal healers often misidentify plants from the Marantaceae family (e.g., Calathea bachemiana and Maranta leuconeura) as Kaempferia, which leads to adulteration of the medicinal herb. This misidentification of herbs occurs in NE India because Zingiberaceae plant barcoding information is inadequate. As a consequence, herbal medicine is not only therapeutically less effective but may also cause adverse reactions that range from mild to life-threatening. In this study, we used eight barcoding loci to develop “fingerprints” for four Kaempferia species and two species frequently mistaken for Kaempferia. The PCR and sequencing success of the loci matK, rbcL and trnH-psbA were found to be 100%;the combination of matK, rbcL, and trnH-psbA proved to be the ideal locus for discriminating the Kaempferia species from their adulterants because the combined loci showed greater variability than individual loci. This reliable tool was therefore developed in the current study for accurate identification of Kaempferia plants which can effectively resolve identification issues for herbal healers. | Supriyo Basak Ramesh Aadi Moolam Ajay Parida Sudip Mitra Latha Rangan | 2019 | Plant Diversity2019，41，3： | 2 |
| 5 | Ethnomedical uses of Zingiberaceous plants of Northeast India显示文摘 | Tushar Supriyo Basak Gajen C. Sarma Latha Rangan | 2010 | Journal of Ethnopharmacology2010，，1： | 2 |
| 6 | Effect of impu- rities in the channel of a spin field effect transistor (SPINFET)显示文摘 | Marc Cahay Supriyo Bandyopadhyay | 2001 | IEEE2001，1，2： | 1 |
| 7 | Obscure GI bleeding in the tropics: impact of introduction of double-balloon and capsule endoscopies on outcome显示文摘 | Kshaunish Das Rajib Sarkar Jayanta Dasgupta Sukanta Ray Supriyo Ghatak Kausik Das Asit R. Mridha Gopal K. Dhali A. Chowdhury | 2010 | Gastrointestinal Endoscopy2010，，2： | 1 |
| 8 | A generalized model for periodic transducers with arbitrary voltages显示文摘 | Supriyo D Bill J H | 1979 | IEEE Transactions on Sonics and Ultrasonics1979，26，1： | 1 |
| 9 | Group-4 dipyrrolylmethane complexes in intramolecular olefin hydroamination 显示文摘 | Supriyo M Odom A L | 2008 | Organometallics2008，27，： | 1 |
| 10 | Element factor for periodic transducers显示文摘 | Supriyo D Bill J H | 1980 | IEEE Transactions on Sonics and Ultrasonics1980，27，1： | 1 |
| 11 | Spin relaxation in the channel of a spin field- effect transistor显示文摘 | Sandipan Pramanik Supriyo Bandyopadhyay Marc Cahay | 2005 | IEEE2005，4，1： | 1 |
| 12 | Performance Projections for Ba-llistic Carbon Nanotube Field-Effect Transistors显示文摘 | Guo J Mark L Supriyo D | 2002 | ApplPhys Lett2002，80，： | 1 |
| 13 | Senescence‐associated l nc RNA s: senescence‐associated long noncoding RNA s显示文摘 | Kotb Abdelmohsen Amaresh Panda Min‐Ju Kang Jason Xu Roza Selimyan Je‐Hyun Yoon Jennifer L. Martindale Supriyo De William H. Wood Kevin G. Becker Myriam Gorospe | 2013 | Aging Cell2013，，5： | 1 |
| 14 | A distributed and selforganizing scheduling algorithm for energy-efficient data aggregation in wireless sensor networks 显示文摘 | SUPRIYO C TIM N NIRVANA M | 2008 | ACM Trans on Sensor Networks2008，4，4： | 1 |
| 15 | Investigation of latest generation pulsed fiber laser in dissimilar joining of Al and Mg alloys显示文摘Dissimilar metal joining of magnesium to aluminum was investigated using the latest generation nanosecond pulsed fiber laser. The tensile shear test shows that the average tensile shear strength of a joint was 86 MPa,which was 75% of the aluminum substrate. The weld interface exhibited a mixture phase(Mg solid solution and Mg_(17)Al_(12)) that improves the strength and toughness of the joint. A thin Mg–Al intermetallic compound layer was formed on both sides of the weld seam toward the Al side. Fracture occurred toward the Al substrate side rather than the Mg–Al interface, indicating a high joining strength at the weld interface. | 高琼 Sonia Meco 王克鸿 周琦 郭顺 Supriyo Ganguly | 2018 | Chinese Optics Letters2018，16，6： | 1 |
| 16 | Outcome, Pathologic Findings, and Compliance in Orbital Retinoblastoma (International Retinoblastoma Staging System Stage III) Treated with Neoadjuvant Chemotherapy显示文摘 | Venkatraman Radhakrishnan Seema Kashyap Neelam Pushker Sanjay Sharma Sushmita Pathy Bidhu K. Mohanti Sreenivas Vishnubhatla Supriyo Ghose Sameer Bakhshi | 2012 | Ophthalmology2012，，7： | 1 |
| 17 | A Histopathologic Analysis of Eyes Primarily Enucleated for Advanced Intraocular Retinoblastoma From a Developing Country显示文摘 | Kashyap Seema Sethi Sumita Meel Rachna Pushker Neelam Sen Seema Bajaj Mandeep Singh Chandra Mahesh Ghose Supriyo | 2012 | EN2012，，2： | 1 |
| 18 | Zigzag slabs for solid-state laser amplifiers: batch fabrication and parasitic oscillation suppression 显示文摘 | Arun Kumar Sridharan Shailendhar Saraf Supriyo Sinha | 2006 | Applied Optics2006，45，14： | 1 |
| 19 | Experimental study of an electro-mechanical cvt ratio controller 显示文摘 | Supriyo B Tawi K B Jamaluddin H | 2013 | International Journal of Automotive Technology2013，14，2： | 1 |
| 20 | First-principles analysis of molecular conduction using quantum chemistry software显示文摘 | Prashant Damle Avik W. Ghosh Supriyo Datta | 2002 | Chemical Physics2002，，2： | 1 |
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