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| 1 | A phylogenomic perspective on gene tree conflict and character evolution in Caprifoliaceae using target enrichment data,with Zabelioideae recognized as a new subfamily显示文摘The use of diverse data sets in phylogenetic studies aiming for understanding evolutionary histories of species can yield conflicting inference.Phylogenetic conflicts observed in animal and plant systems have often been explained by hybridization,incomplete lineage sorting(ILS),or horizontal gene transfer.Here,we used target enrichment data,species tree,and species network approaches to infer the backbone phylogeny of the family Caprifoliaceae,while distinguishing among sources of incongruence.We used 713 nuclear loci and 46 complete plastome sequence data from 43 samples representing 38 species from all major clades to reconstruct the phylogeny of the family using concatenation and coalescence approaches.We found significant nuclear gene tree conflict as well as cytonuclear discordance.Additionally,coalescent simulations and phylogenetic species network analyses suggested putative ancient hybridization among subfamilies of Caprifoliaceae,which seems to be the main source of phylogenetic discordance.Ancestral state reconstruction of six morphological characters revealed some homoplasy for each character examined.By dating the branching events,we inferred the origin of Caprifoliaceae at approximately 66.65 Ma in the late Cretaceous.By integrating evidence from molecular phylogeny,divergence times,and morphology,we here recognize Zabelioideae as a new subfamily in Caprifoliaceae.This work shows the necessity of using a combination of multiple approaches to identify the sources of gene tree discordance.Our study also highlights the importance of using data from both nuclear and plastid genomes to reconstruct deep and shallow phylogenies of plants. | Hong-Xin Wang Diego F.Morales-Briones Michael J.Moore Jun Wen Hua-Feng Wang | 2021 | Journal of Systematics and Evolution2021，59，5： | 5 |
| 2 | Plastome phylogenomic insights into the Sino-Japanese biogeography of Diabelia(Caprifoliaceae)显示文摘Understanding the causes of the Sino-Japanese disjunctions in plant taxa has been a central question in eastern Asian biogeography,with vicariance or long-distance dispersal often invoked to explain such patterns.Diabelia Landrein(Caprifoliaceae;Linnaeoideae)comprises four shrubby species with a Sino-Japanese disjunct distribution.The species diversification time within Diabelia,covering a long geological history of the formation process of the Sino-Japanese flora,dated back to the middle Oligocene,therefore,Diabelia would be an ideal model to elucidate the biogeographic patterns of Sino-Japanese disjunctions with climate fluctuation.In this study,we analyzed complete plastome sequence data for 28 individuals representing all four species of Diabelia.These 28 plastomes were found to be highly similar in overall size(156243-157578 bp),structure,gene order,and content.Our phylogenomic analysis of the plastomes supported a close relationship between Diabelia ionostachya(Nakai)Landrein&R.L.Barrett var.wenzhouensis(S.L.Zhou ex Landrein)Landrein from eastern China and Diabelia spathulata(Siebold&Zucc.)Landrein var.spathulata from Japan.Diabelia serrata(Siebold&Zucc.)Landrein was identified as sister to a population of Diabelia sanguinea(Makino)Landrein from Tochigi in central Japan and D.spathulata Landrein,from Toyama,central Japan.Most Diabelia lineages were estimated to have differentiated 8-28 Mya.Our results indicate that two independent vicariance events could explain the disjunction between Japan and Korea in the mid to late Miocene,and between Zhejiang and Japan in the early Miocene. | Hong-Xin Wang Michael J.Moore Russell L.Barrett Sven Landrein Shota Sakaguchi Masayuki Maki Jun Wen Hua-Feng Wang | 2020 | Journal of Systematics and Evolution2020，58，6： | 3 |
| 3 | Plastome characteristics of Cannabaceae显示文摘Cannabaceae is an economically important family that includes ten genera and ca. 117 accepted species.To explore the structure and size variation of their plastomes, we sequenced ten plastomes representing all ten genera of Cannabaceae. Each plastome possessed the typical angiosperm quadripartite structure and contained a total of 128 genes. The Inverted Repeat(IR) regions in five plastomes had experienced small expansions(330 e983 bp) into the Large Single-Copy(LSC) region. The plastome of Chaetachme aristata has experienced a 942-bp IR contraction and lost rpl22 and rps19 in its IRs. The substitution rates of rps19 and rpl22 decreased after they shifted from the LSC to IR. A 270-bp inversion was detected in the Parasponia rugosa plastome, which might have been mediated by 18-bp inverted repeats. Repeat sequences, simple sequence repeats, and nucleotide substitution rates varied among these plastomes.Molecular markers with more than 13% variable sites and 5% parsimony-informative sites were identified, which may be useful for further phylogenetic analysis and species identification. Our results show strong support for a sister relationship between Gironniera and Lozanell(BS ? 100). Celtis, CannabisHumulus, Chaetachme-Pteroceltis, and Trema-Parasponia formed a strongly supported clade, and their relationships were well resolved with strong support(BS ? 100). The availability of these ten plastomes provides valuable genetic information for accurately identifying species, clarifying taxonomy and reconstructing the intergeneric phylogeny of Cannabaceae. | Huanlei Zhang Jianjun Jin Michael J.Moore Tingshuang Yi Dezhu Li | 2018 | Plant Diversity2018，40，3： | 2 |
| 4 | A Theory of Debt Based on the Inalienability of Human Capital显示文摘 | Hart O J.Moore | | 0，，： | 1 |
| 5 | Host recognition by a polyphagous lepidopteran (Helicoverpa armigera): primary host plants, host produced volatiles and neurosensory stimulation显示文摘 | C. N. K.RAJAPAKSE G. H.WALTER C. J.MOORE C. D.HULL B. W.CRIBB | 2006 | Physiological Entomology2006，，3： | 1 |
| 6 | Debt and Seniority:An Analysis of the Role of Hard Claims in Constraining Management显示文摘 | Hart O J.Moore | | 0，，： | 1 |
| 7 | Default and Renegotiation:A Dynamic Model of Debt显示文摘 | Hart O J.Moore | | 0，，： | 1 |
| 8 | Credit Cycles显示文摘 | Kiyotaki N J.Moore | | 0，，： | 1 |
| 9 | Balance-Sheet Contagion显示文摘 | Kiyotaki N J.Moore | | 0，，： | 1 |
| 10 | Endoscopic versus Traditional Approaches for Excision of Juvenile Nasopharyngeal Angiofibroma显示文摘 | Shepherd G.Pryor Eric J.Moore Jan L.Kasperbauer | 2009 | The Laryngoscope2009，，7： | 1 |
| 11 | Microscale tissue-engineered models:overcoming barriers to adoption for neural regeneration research显示文摘The last decade has seen a steady proliferation in the use of tissue-engineered cell culture systems(Deforest and Anseth,2012),and these have been put to good use for studying neural axon growth and guidance(Li and Hoffman-Kim,2008;Roy et al.,2013).These systems have been designed to more closely mimic the natural microenvironment of the developing or repairing nervous system and to enable spatiotemporal control over certain aspects of the microenvironment.The 3D nature of | Michael J.Moore | 2016 | Neural Regeneration Research2016，11，3： | 1 |
| 12 | Debt and seniority:an analysis of the role of hard Claims in constraining management显示文摘 | Hart.0 J.Moore | | 0，，85： | 1 |
| 13 | Phylogenetic patterns suggest frequent multiple origins of secondary metabolites across the seed-plant‘tree of life’显示文摘To evaluate the phylogenetic patterns of the distribution and evolution of plant secondary metabolites(PSMs),we selected 8 classes of PSMs and mapped them onto an updated phylogenetic tree including 437 families of seed plants.A significant phylogenetic signal was detected in 17 of the 18 tested seed-plant clades for at least 1 of the 8 PSM classes using the D statistic.The phylogenetic signal,nevertheless,indicated weak clustering of PSMs compared to a random distribution across all seed plants.The observed signal suggests strong diversifying selection during seed-plant evolution and/or relatively weak evolutionary constraints on the evolution of PSMs.In the survey of the current phylogenetic distributions of PSMs,we found that multiple origins of PSM biosynthesis due to external selective forces for diverse genetic pathways may have played important roles.In contrast,a single origin of PSMs seems rather uncommon.The distribution patterns for PSMs observed in this study may also be useful in the search for natural compounds for medicinal purposes. | Yongzeng Zhang Tao Deng Lu Sun Jacob B.Landis Michael J.Moore Hengchang Wang Yuehua Wang Xiaojiang Hao Jijun Chen Shenghong Li Maonian Xu Pema-Tenzin Puno Peter H.Raven Hang Sun | 2021 | National Science Review2021，8，4： | 1 |
| 14 | 查看详情显示文摘 | J.Moore | | 0，，06： | 1 |
| 15 | 查看详情显示文摘 | J.Moore | | 0，，7259： | 1 |
| 16 | Property Rights and the Nature of the Firm显示文摘 | Hart O J.Moore | | 0，，： | 1 |
| 17 | Blockade of GITR–GITRL interaction maintains Treg function to prolong allograft survival显示文摘 | James I.Kim Samsher B.Sonawane Major K.Lee Seoung‐HoonLee Patrick E.Duff Daniel J.Moore Matthew R.O'Connor Moh‐MohLian ShaopingDeng YongwonChoi HeidiYeh Andrew J.Caton James F.Markmann | 2010 | Eur J Immunol2010，，5： | 1 |
| 18 | Product Liability,Research and Development,and Innovation显示文摘 | Viscusi W.Kip Michael J.Moore | | 0，，： | 1 |
| 19 | A systematic review of the accuracy of ultrasound in the diagnosis of endometriosis显示文摘 | J.Moore S.Copley J.Morris D.Lindsell S.Golding S.Kennedy | 2002 | Ultrasound Obstet Gynecol2002，，6： | 1 |
| 20 | Credit Cycles显示文摘 | Kiyotaki N J.Moore | | 0，，02： | 1 |
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