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| 1 | Alternative splicing enhances transcriptome complexity in desiccating seeds显示文摘Before being dispersed in the environment, mature seeds need to be dehydrated. The survival of seeds after dispersal depends on their low hydration in combination with high desiccation tolerance. These characteristics are established during seed maturation. Some key seed maturation genes have been reported to be regulated by alternative splicing(AS). However, so far AS was described only for single genes and a comprehensive analysis of AS during seed maturation has been lacking. We investigated gene expression and AS during Arabidopsis thaliana seed development at a global level, before and after desiccation. Bioinformatics tools were developed to identify differentially spliced regions within genes. Our data suggest the importance and shows the peculiar features of AS during seed desiccation. We identified AS in 34% of genes that are expressed at both timepoints before and after desiccation. Most of these AStranscript variants had not been found before in other tissues.Among the AS genes some seed master regulators could be found. Interestingly, 6% of all expressed transcripts were not transcriptionally regulated during desiccation, but only modified by AS. We propose that AS should be more routinely taken into account in the analysis of transcriptomic data to prevent overlooking potentially important regulators. | Arunkumar Srinivasan Jose M. Jimenez-Gomez Fabio Fornara Wim J. J. Soppe Vittoria Brambilla | 2016 | Journal of Integrative Plant Biology2016，58，12： | 2 |
| 2 | Molecular networks regu- lating Arabidopsis seed maturation, after-ripening, dormancy and ger- mination显示文摘 | Holdsworth M J Bentsink L Soppe W J | 2008 | New Phytol2008，179，1： | 1 |
| 3 | Workshop cluster 1 + γδT- cell receptor T cells for calves express high levels of interfeom - γ,in response to stimulation with interleukin - 12 and intedeukiu - 18 显示文摘 | Price SJ Sopp P Howard CJ | 2007 | Immunology2007，120，1： | 1 |
| 4 | Identification of two distinct populations of dendritic cells in afferent lymph that vary in their ability to stimulate T cells显示文摘 | Howard CJ Sopp P | 1997 | J Immunol1997，159，11： | 1 |
| 5 | Immunity bovine viral diarrhea virus calves:the role of different T-cell sub-populations analysed by specific depletion in vivo with monoclonal antibodies显示文摘 | Clarke M C Sopp P | 1992 | Vet Immunolpathol1992，32，： | 1 |
| 6 | Characterizing ground water use by safflower using weighing lysimeters 显示文摘 | SOPPE R W O AYARS J E | 2003 | Agricultural Water Management2003，60，： | 1 |
| 7 | Photoreceptor regulation of CONSTANS protein in photoperiodic ower- ing显示文摘 | Valverde F Mouradov A Soppe W etal | 2004 | Science2004，，303： | 1 |
| 8 | Bulk and surface passivation of silicon solar cells accomplished by silicon nitride deposited on industrial scale by microwave PECVD显示文摘 | Soppe W Rieffe H Weeber A | 2005 | Prog Photovoltaics2005，13，7： | 1 |
| 9 | Bulk and surface passivation of silicon solar cells accomplished by silicon nitride deposited on industrial scale by microwave PECVD显示文摘 | Wim Soppe Henk Riffe Arthur Weeber | 2005 | Progress in Photovoltaics:Research and Applications2005，13，7： | 1 |
| 10 | Calibration of capacitance probe sensors in a saline silty clay soil显示文摘 | Kelleners T J Soppe R W Ayars J E | 2004 | Soil SciSocAm J2004，68，： | 1 |
| 11 | The effect of argon dilution on deposition of microcrystalline silicon by microwave plasma enhanced chemical vapor deposition显示文摘 | SOPPE W J DEVILEE C GEUSEBROEK M LOFFLER J MUFFLER H J | 2007 | Thin Solid Films2007，515，19： | 1 |
| 12 | Molecular networks regu- lating Arabidopsis seed maturation, after-ripening, dormancy and germination 显示文摘 | Holdsworth M J Bentsink L Soppe W J | 2008 | New Phytol2008，179，1： | 1 |
| 13 | The early-flowering mutant efs is involved in the autonomous promotion pathway of Arabidopsis thliana 显示文摘 | Soppe W J | 1999 | Development1999，126，： | 1 |
| 14 | Calibration of capacitance probe sensors in a saline silty clay soil显示文摘 | Kelleners T J Soppe R W O Ayars J E | 2004 | Soil Science Society of America Journal2004，68，5： | 1 |
| 15 | Passivating multicrystalline Si solar cells using SiNx: H显示文摘 | Romijn I G Soppe W J Rieffe H C | 2005 | Materials and processes Vail Colorado2005，，8： | 1 |
| 16 | Factors affecting the inhibition by antisense RNA of granule-bound starch synthase gene expression in potato显示文摘 | Soppe W J Jacobsen E | 1994 | Plant Mol Biol1994，26，6： | 1 |
| 17 | Factors affecting the inhibition by antisense RNA of granule-bound starch synthase gene expression in potato显示文摘 | Soppe W J Jacobson E V Visser R G F | 1995 | Mol Gen Genet1995，246，6： | 1 |
| 18 | Workshop cluster 1+γ T-cell receptor T cells from calves express high levels of interfer-on-γin response to stimulation with interleukin-12 and interleukin-18 显示文摘 | PRICE S J SOPP P HOWARD C J | 2007 | Immunology2007，120，： | 1 |
| 19 | DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly inArabidopsis显示文摘 | Soppe W J J Jasencakova Z Houben A | | 0，，23： | 1 |
| 20 | Photoreceptor regulation of CONSTANS protein in photoperiodic flowering显示文摘 | VALVERDE F MOURADOV A SOPPE W | 2004 | Science2004，303，5660： | 1 |
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