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| 1 | A Genomic Variation Map Provides Insights into the Genetic Basis of Spring Chinese Cabbage (Brassica rapa ssp.pekinensis)Selection显示文摘Chinese cabbage is the most consumed leafy crop in East Asian countries.However,premature bolting induced by continuous low temperatures severely decreases the yield and quality of the Chinese cabbage, and therefore restricts its planting season and geographic distribution.In the past 40years,spring Chinese cabbage with strong winterness has been selected to meet the market demand.Here,we report a genome variation map of Chinese cabbage generated from the resequencing data of 194 geographically diverse accessions of three ecotypes.In-depth analyses of the selection sweeps and genome-wide patterns revealed that spring Chinese cabbage was selected from a specific population of autumn Chinese cabbage around the area of Shandong peninsula in northern China.We identified 23 genomic loci that underwent intensive selection,and further demonstrated by gene expression and haplotype analyses that the incorporation of elite alleles of VERNALISATION INSENTIVE 3.1(BrVIN3.1)and FLOWER LOCUS C 1(BrFLC1)is a determinant genetic source of variation during selection.Moreover,we showed that the quantitative response of BrVIN3.1 to cold due to the sequence variations in the cis elements of the BrVlN3.1 promoter significantly contributes to bolting-time variation in Chinese cabbage.Collectively, our study provides valuable insights into the genetic basis of spring Chinese cabbage selection and will facilitate the breeding of bolting-resistant Varieties by molecular-marker-assisted selection,transgenic or gene editingapproaches. | Tongbing Su Weihong Wang Peirong Li Bin Zhang Pan Li Xiaoyun Xin Honghe Sun Yangjun Yu Deshuang Zhang Xiuyun Zhao Changlong Wen Gang Zhou Yuntong Wang Hongkun Zheng Shuancang Yu Fenglan Zhang | 2018 | Molecular Plant2018，11，11： | 6 |
| 2 | Identification of long noncoding RNAs involved in resistance to downy mildew in Chinese cabbage显示文摘Brassica downy mildew,a severe disease caused by Hyaloperonospora brassicae,can cause enormous economic losses in Chinese cabbage(Brassica rapa L.ssp.pekinensis)production.Although some research has been reported recently concerning the underlying resistance to this disease,no studies have identified or characterized long noncoding RNAs involved in this defense response.In this study,using high-throughput RNA sequencing,we analyzed the disease-responding mRNAs and long noncoding RNAs in two resistant lines(T12–19 and 12–85)and one susceptible line(91–112).Clustering and Gene Ontology analysis of differentially expressed genes(DEGs)showed that more DEGs were involved in the defense response in the two resistant lines than in the susceptible line.Different expression patterns and proposed functions of differentially expressed long noncoding RNAs among T12–19,12–85,and 91–112 indicated that each has a distinct disease response mechanism.There were significantly more cis-and trans-functional long noncoding RNAs in the resistant lines than in the susceptible line,and the genes regulated by these RNAs mostly participated in the disease defense response.Furthermore,we identified a candidate resistance-related long noncoding RNA,MSTRG.19915,which is a long noncoding natural antisense transcript of a MAPK gene,BrMAPK15.Via an agroinfiltration-mediated transient overexpression system and virus-induced gene silencing technology,BrMAPK15 was indicated to have a greater ability to defend against pathogens.MSTRG.19915-silenced seedlings showed enhanced resistance to downy mildew,probably because of the upregulated expression of BrMAPK15.This research identified and characterized long noncoding RNAs involved in resistance to downy mildew,laying a foundation for future in-depth studies of disease resistance mechanisms in Chinese cabbage. | Bin Zhang Tongbing Su Peirong Li Xiaoyun Xin Yunyun Cao Weihong Wang Xiuyun Zhao Deshuang Zhang Yangjun Yu Dayong Li Shuancang Yu Fenglan Zhang | 2021 | Horticulture Research2021，8，1： | 3 |
| 3 | A DETECTION METHOD OF HIGH RESOLUTION RADAR TARGETS BASED ON POSITION CORRELATION显示文摘This paper studies a detection method of targets of high resolution radar operating at the band of millimeter-wave(32-38GHz) under the background of the clutters, and proposes a new nonparametric detection method, which not only does less computation, but also is able to detect multiple extended targets radially distributed along distance 'corridor', based on the position (range) correlation information of one-dimensional range images(or called range profiles) of high resolution radar targets. The experimental results, on the real echo data of tank illuminated by the millimeter-wave stepped frequency high resolution radar, have certified that such a method presented in this paper is a very effective detection method for multiple extended targets. | Huang Deshuang(National Laboratory of Pattern Recognition, Institute of Automation, Academia Sinica, Beijing 100080)Han Yueqiu(Department of Electronic Engineering, Beijing Institute of Technology, Beijing 100081) | 1998 | Journal of Electronics(China)1998，15，2： | 2 |
| 4 | An efficient local chan-vese model for image segmentation 显示文摘 | Wang Xiaofeng Huang Deshuang Xu Huan | 2010 | Pattern Recognition2010，43，3： | 1 |
| 5 | Noise reduction in lidar signal based on discrete wavelet transform 显示文摘 | Fang Haitao Huang Deshuang | 2004 | Optics Communications2004，38，5： | 1 |
| 6 | A novel adaptive sequential niche technique for multimodal function optimization显示文摘 | Zhang Jun Huang Deshuang Lok Tat-Ming | 2006 | Neurocomputing2006，69，16： | 1 |
| 7 | An efficient local Chan-Vese model for image segmentation 显示文摘 | Wang Xiaofeng Huang Deshuang Xu Huan | 2010 | Pattern Recognition2010，43，3： | 1 |
| 8 | An Efficient Local Chan-Vese Model for Image Segmentation显示文摘 | Wang Xiaofeng Huang Deshuang Xu Huan | | 0，，03： | 1 |
| 9 | Genome-wide analysis of changes in miRNA and target gene expression reveals key roles in heterosis for chinese cabbage biomass显示文摘Heterosis is a complex phenomenon in which hybrids show better phenotypic characteristics than their parents do.Chinese cabbage(Brassica rapa L.spp.pekinensis)is a popular leafy crop species,hybrids of which are widely used in commercial production;however,the molecular basis of heterosis for biomass of Chinese cabbage is poorly understood.We characterized heterosis in a Chinese cabbage hybrid cultivar and its parental lines from the seedling stage to the heading stage;marked heterosis of leaf weight and biomass yield were observed.Small RNA sequencing revealed 63 and 50 differentially expressed microRNAs(DEMs)at the seedling and early-heading stages,respectively.The expression levels ofthe majority of miRNA clusters in the hybrid were lower than the mid-parent values(MPVs).Using degradome sequencing,we identi fied 1,819 miRNA target genes.Gene ontology(GO)analyses demonstrated that the target genes ofthe MPV-DEMs and low parental expression level dominance(ELD)miRNAs were signi ficantly enriched in leaf morphogenesis,leaf development,and leaf shaping.Transcriptome analysis revealed that the expression levels of photosynthesis and chlorophyll synthesis-related MPV-DEGs(differentially expressed genes)were signi ficantly different in the F_(1) hybrid compared to the parental lines,resulting in increased photosynthesis capacity and chlorophyll content in the former.Furthermore,expression of genes known to regulate leaf development was also observed at the seedling stage.Arabidopsis plants overexpressing BrGRF4.2 and bra-miR396 presented increased and decreased leaf sizes,respectively.These results provide new insight into the regulation of target genes and miRNA expression patterns in leaf size and heterosis for biomass of B.rapa. | Peirong Li Tongbing Su Deshuang Zhang Weihong Wang Xiaoyun Xin Yangjun Yu Xiuyun Zhao Shuancang Yu Fenglan Zhang | 2021 | Horticulture Research2021，8，1： | 1 |
| 10 | Gene expression data classification using locally linear discriminant embedding显示文摘 | LI Bo ZHENG Churthou HYANG Deshuang | 2010 | Computers in Biology and Medicine2010，40，10： | 1 |
| 11 | An Efficient Local Chan-Vese Model for Image Segmentation显示文摘 | Wang Xiaofeng Huang Deshuang Xu Huan | 2010 | Pattern Recognition2010，43，3： | 1 |
| 12 | A Novel Adaptive Sequential Niche Technique for Multimodal Function Optimization显示文摘 | Jun Zhang Huang Deshuang Lok T M | 2006 | Neuro Computing2006，6，9： | 1 |
| 13 | An etiicient local Chan- Vese model for image segmentation 显示文摘 | WANG Xiaofeng HUANG Deshuang XU Huao | 2010 | Pattern Recognition2010，43，3： | 1 |
| 14 | Locally linear discriminant embedding:An efficient method for face recognition 显示文摘 | Li Bo Zheng Chunhou Huang Deshuang | 2008 | Pattern Recognition2008，41，12： | 1 |
| 15 | A constructive hybrid structure optimization methodology for radial basis proba- bilistic neural networks 显示文摘 | HUANG Deshuang DU Jixiang | 2008 | IEEE Transactions on Neural Networks / a Publication of the IEEE Neural Networks Council2008，19，12： | 1 |
| 16 | Prediction protein-protein interaction sites from residue spatial sequence profile and evolution rate 显示文摘 | WANG Bing CHEN Peng HUANG Deshuang LI Jingjing TAT-MING Lok LYU M R | 2006 | FEBS Letters2006，580，： | 1 |
| 17 | Understanding tissue-specificity with human tissue-specific regulatory networks显示文摘Tissue-specificity is important for the function of human body. However, it is still not clear how the functional diversity of different tissues is achieved. Here we construct gene regulatory networks in 13 human tissues by integrating large-scale transcription factor(TF)-gene regulations with gene and protein expression data. By comparing these regulatory networks, we find many tissue-specific regulations that are important for tissue identity. In particular, the tissue-specific TFs are found to regulate more genes than those expressed in multiple tissues, and the processes regulated by these tissue-specific TFs are closely related to tissue functions.Moreover, the regulations that are present in certain tissue are found to be enriched in the tissue associated disease genes, and these networks provide the molecular context of disease genes. Therefore, recognizing tissuespecific regulatory networks can help better understand the molecular mechanisms underlying diseases and identify new disease genes. | Weili GUO Lin ZHU Suping DENG Xingming ZHAO Deshuang HUANG | 2016 | Science China(Information Sciences)2016，59，7： | 1 |
| 18 | Cancer classiflcation using rotation forest 显示文摘 | Liu Kunhong Huang Deshuang | 2008 | Computers in Biology and Medicine2008，38，5： | 1 |
| 19 | A novel adaptive sequential niche technique formultimodal function optimization显示文摘 | Zhang Jun Huang Deshuang Lok T M | 2006 | Neurocomputing2006，69，1618： | 1 |
| 20 | All-Climate Aluminum-Ion Batteries Based on Binder-Free MOF-Derived FeS_(2)@C/CNT Cathode显示文摘Aluminum-ion batteries(AIBs)are promising next-generation batteries systems because of their features of low cost and abundant aluminum resource.However,the inferior rate capacity and poor all-climate performance,especially the decayed capacity under low temperature,are still critical challenges toward high-specific-capacity AIBs.Herein,we report a binder-free and freestanding metal-organic framework-derived FeS_(2)@C/carbon nanotube(FeS_(2)@C/CNT)as a novel all-climate cathode in AIBs working under a wide temperature window between−25 and 50℃ with exceptional flexibility.The resultant cathode not only drastically suppresses the side reaction and volu-metric expansion with high capacity and long-term stability but also greatly enhances the kinetic process in AIBs with remarkable rate capacity(above 151 mAh g^(−1) at 2 A g^(−1))at room temperature.More importantly,to break the bottleneck of the inherently low capacity in graphitic material-based all-climate AIBs,the new hierarchical conductive composite FeS_(2)@C/CNT highly promotes the all-climate performance and delivers as high as 117 mAh g^(−1) capacity even under−25°C.The well-designed metal sulfide electrode with remarkable performance paves a new way toward all-climate and flexible AIBs. | Yuxiang Hu Hongjiao Huang Deshuang Yu Xinyi Wang Linlin Li Han Hu Xiaobo Zhu Shengjie Peng Lianzhou Wang | 2021 | Nano-Micro Letters2021，13，10： | 1 |
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