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| 1 | Transcriptome reprogramming,epigenetic modifications and alternative splicing orchestrate the tomato root response to the beneficial fungus Trichoderma harzianum显示文摘Beneficial interactions of rhizosphere microorganisms are widely exploited for plant biofertilization and mitigation of biotic and abiotic constraints.To provide new insights into the onset of the roots–beneficial microorganisms interplay,we characterised the transcriptomes expressed in tomato roots at 24,48 and 72 h post inoculation with the beneficial fungus Trichoderma harzianum T22 and analysed the epigenetic and post-trascriptional regulation mechanisms.We detected 1243 tomato transcripts that were differentially expressed between Trichoderma-interacting and control roots and 83 T.harzianum transcripts that were differentially expressed between the three experimental time points.Interaction with Trichoderma triggered a transcriptional response mainly ascribable to signal recognition and transduction,stress response,transcriptional regulation and transport.In tomato roots,salicylic acid,and not jasmonate,appears to have a prominent role in orchestrating the interplay with this beneficial strain.Differential regulation of many nutrient transporter genes indicated a strong effect on plant nutrition processes,which,together with the possible modifications in root architecture triggered by ethylene/indole-3-acetic acid signalling at 72 h post inoculation may concur to the well-described growth-promotion ability of this strain.Alongside,T.harzianum-induced defence priming and stress tolerance may be mediated by the induction of reactive oxygen species,detoxification and defence genes.A deeper insight into gene expression and regulation control provided first evidences for the involvement of cytosine methylation and alternative splicing mechanisms in the plant–Trichoderma interaction.A model is proposed that integrates the plant transcriptomic responses in the roots,where interaction between the plant and beneficial rhizosphere microorganisms occurs. | Monica De Palma Maria Salzano Clizia Villano Riccardo Aversano Matteo Lorito Michelina Ruocco Teresa Docimo Anna Lisa Piccinelli Nunzio D’Agostino Marina Tucci | 2019 | Horticulture Research2019，6，1： | 2 |
| 2 | Analysis of eyanobaeterial toxins by hydrophilie interaction liquid chromatography- mass spectrometry 显示文摘 | Dell' Aversano C Eaglesham G K Quilliam M A | 2004 | Journal of Chromatography A2004，1028，： | 1 |
| 3 | Thrombolytic therapy vs primary percutaneous coronary intervention for myocardial infarction in patients presenting to hospitals without onsite cardiac surgery: a randomized controlled trial显示文摘 | Aversano T Aversano LT Passamani E | 2002 | JAMA2002，287，： | 1 |
| 4 | Hydrophilic interaction liquid chromatography-mass spectrometry for the analysis of paralytic shellfish poisoning (PSP) toxins显示文摘 | Dell'Aversano C Hess P Quilliam M A | 2005 | J Chromatogr A2005，1081，2： | 1 |
| 5 | Investi-gation of the toxin profile of Greek mussels Mytilus galloprovincialis by liquid chromatography-mass spectrometry 显示文摘 | CIMINIELLO P Dell' AVERSANO C FATTORUSSO E | 2006 | Toxicon2006，47，： | 1 |
| 6 | An empirical study on the maintenance of source code clones 显示文摘 | THUMMALAPENTA S CERULO L AVERSANO L | 2010 | Empirical Software Engineering2010，15，1： | 1 |
| 7 | Hydrophilic interaction liquid chromatography/mass spectrometry for determination of domoic acid in Adriatic shellfish显示文摘 | PatriziaCiminiello CarmelaDell’Aversano ErnestoFattorusso MartinoForino Giuseppina S.Magno LucianaTartaglione Michael A.Quilliam AureliaTubaro RobertoPoletti | 2005 | Rapid Commun. Mass Spectrom2005，，14： | 1 |
| 8 | Eedyste- roids from the Caribbean sponge Iotrochota birotulata 显示文摘 | Costantino V Aversano C D Fattorusso E | 2000 | Steroids2000，65，： | 1 |
| 9 | Using concept lattices to support service selection显示文摘 | Aversano L Bruno M Canfora G | 2006 | International Journal of Web Services Research2006，3，4： | 1 |
| 10 | Analysis of cyanobacterial toxins by hydrophilic interaction liquid chromatography-massspectrometry显示文摘 | Aversano D Eaglesham C Quilliam G K | 2004 | J Chromatogr A2004，1028，： | 1 |
| 11 | An empirical study oa the maintenance of source code clones显示文摘 | THUMMALAPENTA S CERULO L AVERSANO L | 2009 | Em- pirical Software Engineering2009，15，1： | 1 |
| 12 | Business process reennineerinn and workflow automation:a technology transfer experience显示文摘 | Canfora G De Lucia L | 2002 | The Journal of Systems and Software2002，63，1： | 1 |
| 13 | Selective enhancement of function of stunned myocardium by increased flow显示文摘 | STAHL L D AVERSANO T R BECHER L C | 1986 | Circulation1986，74，： | 1 |
| 14 | Resistance traits and AFLP characterization of diploid primitive tuber-bearlng potatoes 显示文摘 | RICCARDO AVERSANO RAFFAELLA ERCOLANO MARIA FRUSCIANTE LUIGI | 2007 | Genet Resour and Crop Evolution2007，54，8： | 1 |
| 15 | Complex yessotoxins profile in Protoceratium reticulatum from northwestem Adriatic Sea revealed by LC-MS analysis显示文摘 | CIMINIELLO P DELL'AVERSANO C FATTORUSSO E | 2003 | Toxicon2003，42，： | 1 |
| 16 | Mo- lecular tools for exploring polyploid genomes in plants显示文摘 | AVERSANO R ERCOLANO M R CARUSO I | 2012 | International Journal of Molecular Sciences2012，13，10： | 1 |
| 17 | Thrombolytic therapy vs primary percutaneous coronary intervention for myocardial infarction in patients presenting to hospitals without on-site cardiac surgery: a randomized controlled trial 显示文摘 | Aversano LT Passamani E | 2002 | JAMA2002，287，15： | 1 |
| 18 | TomatEST database: in silico exploitation of EST data to explore expression patterns in tomato species显示文摘 | D'AGOSTINO N AVERSANO M FRUSCIANTE L CHIUSANO M L | 2007 | Nucleic Acids Research2007，35，： | 1 |
| 19 | Genome-wide identification and analysis of candidate genes for disease resistance in tomato显示文摘 | G. Andolfo W. Sanseverino R. Aversano L. Frusciante M. R. Ercolano | 2014 | Molecular Breeding2014，，1： | 1 |
| 20 | Hydrophilicinteraction liquid chromatography-mass spectrometry forthe analysis of paralytic shellfish poisoning toxins 显示文摘 | Aversano C D Hess P Quilliam M A | 2005 | Journal of Chromatography A2005，，1081： | 1 |
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