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| 1 | Two gap-free reference genomes and a global view of the centromere architecture in rice显示文摘Rice(Oryza sativa),a major staple throughout the world and a model system for plant genomics and breeding,was the first crop genome sequenced almost two decades ago.However,reference genomes for all higher organisms to date contain gaps and missing sequences.Here,we report the assembly and analysis of gap-free reference genome sequences for two elite O.sativa xian/indica rice varieties,Zhenshan 97 and Minghui 63,which are being used as a model system for studying heterosis and yield.Gap-free reference genomes provide the opportunity for a global view of the structure and function of centromeres.We show that all rice centromeric regions share conserved centromere-specific satellite motifs with different copy numbers and structures.In addition,the similarity of CentO repeats in the same chromosome is higher than across chromosomes,supporting a model of local expansion and homogenization.Both genomes have over 395 non-TE genes located in centromere regions,of which∼41%are actively transcribed.Two large structural variants at the end of chromosome 11 affect the copy number of resistance genes between the two genomes.The availability of the two gap-free genomes lays a solid foundation for further understanding genome structure and function in plants and breeding climate-resilient varieties. | Jia-Ming Song Wen-Zhao Xie Shuo Wang Yi-Xiong Guo Dal-Hoe Koo Dave Kudrna Chenbo Gong Yicheng Huang Jia-Wu Feng Wenhui Zhang Yong Zhou Andrea Zuccolo Evan Long Seunghee Lee Jayson Talag Run Zhou Xi-Tong Zhu Daojun Yuan Joshua Udall Weibo Xie Rod AWing Qifa Zhang Jesse Poland Jianwei Zhang Ling-Ling Chen | 2021 | Molecular Plant2021，14，10： | 9 |
| 2 | Urbanization and rural labor supply: A historical study of Bogotá, Colombia since 1920显示文摘 | Alan Udall | 1980 | Studies In Comparative International Development1980，，3： | 1 |
| 3 | A majority of cotton genes are expressed in single-celled fiber显示文摘 | Ran Hovav Joshua A. Udall Einat Hovav Ryan Rapp Lex Flagel Jonathan F. Wendel | 2008 | Planta2008，，2： | 1 |
| 4 | Genome redundancy and plasticity within ancient and recent Brassica crop species 显示文摘 | Lukens L N Quijada P A Udall J | 2004 | Biological Journal Linnean Society2004，82，4： | 1 |
| 5 | The etiology and control of urolithiasis显示文摘 | Udall R H Chow F H | 1969 | Adv Vet Sci1969，，13： | 1 |
| 6 | Inheritance of polyphenol oxidase in three recombinant inbred populations of wheat显示文摘 | Souza E Udall J | 1998 | Agronomy abstaacts1998，67，2： | 1 |
| 7 | The combination of chronic myeloid leukemia and multiple myeloma in one patient显示文摘 | Romanenko NA Bessmel'tsev SS Udal'eva VIu | 2013 | Vopr Onkol2013，59，2： | 1 |
| 8 | Maintaining the potency of double lumen slisastic jugular catheters for hemodialysis显示文摘 | Bestey ME Thomas A | 1993 | Int J Artif organs1993，16，： | 1 |
| 9 | Analyses of a multi-parent population derived from two diverse alfalfa germplasms:Testcross evaluations and phenotype-DNA associations显示文摘 | MAUREIRA-BUTLER I J UDALL J A OSBORN T C | 2007 | Theor Appl Genet2007，115，6： | 1 |
| 10 | Development and mapping of SNP assays in allotetraploid cotton显示文摘 | Robert Byers David Harker Scott Yourstone Peter Maughan Joshua Udall | 2012 | Theoretical and Applied Genetics2012，，7： | 1 |
| 11 | Three-Dimensional analysis of 2 fusionless scoliosis treatments:a flexible ligament tether versus a rigid-shape memory alloy staple显示文摘 | Braun JT Akyuz E Udall H | 2006 | Spine2006，31，3： | 1 |
| 12 | Quantitative rtait loci for flour Viscosity in winter wheat显示文摘 | Udall J A Souza E Anderson J | 1999 | Crop Sci1999，39，： | 1 |
| 13 | Quantitative trait loci forflour viscosity in winter wheat显示文摘 | Udall J A Souza E Anderson J | 1999 | Crop Sci1999，39，1： | 1 |
| 14 | Oligomerization of isobutylene on decationized L zeolites显示文摘 | Minachev Kh M Udal' tsova E A Dergachev A A | 1988 | Neftekhimiya1988，28，2： | 1 |
| 15 | Cost comparisonof drug-drug and drug-condition interactions in patients withpainful diabetic peripheral neuropathy treated withpregabalin versus duloxetine显示文摘 | Johnston SS Udall M Cappelleri JC | 2013 | Am J Health Syst Pharm2013，70，24： | 1 |
| 16 | From the inside out: The expeditionary learning process of teacher change显示文摘 | Udall D Rugen L | 1997 | Phi Delta Kappan1997，78，5： | 1 |
| 17 | Infant feeding:initiation, problems,approaches 显示文摘 | Udall JN Jr | 2007 | Curr Probl Pediatr Adolesc Health Care2007，37，10： | 1 |
| 18 | Phenotypic effects of introducing unadapted germplasm into a spring canola hybrid显示文摘 | Udall J A Quijada P A Polewicz H | 2004 | Crop Scince2004，44，： | 1 |
| 19 | Analyses of a multi-parent population derived from two diverse alfalfa germplasms:testcross evaluations and phenotype--DNA associations显示文摘 | Maureira-Butler I J J A Udall and T C Osbom | 2007 | Theoretical and Applied Genetics2007，115，6： | 1 |
| 20 | Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant显示文摘 | Hovav R Udall J A Chaudhary B | 2008 | Proc Natl Acad Sci USA2008，105，16： | 1 |
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