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| 1 | Two gap-free reference genomes and a global view of the centromere architecture in rice显示文摘Rice(Oryza sativa),a major staple throughout the world and a model system for plant genomics and breeding,was the first crop genome sequenced almost two decades ago.However,reference genomes for all higher organisms to date contain gaps and missing sequences.Here,we report the assembly and analysis of gap-free reference genome sequences for two elite O.sativa xian/indica rice varieties,Zhenshan 97 and Minghui 63,which are being used as a model system for studying heterosis and yield.Gap-free reference genomes provide the opportunity for a global view of the structure and function of centromeres.We show that all rice centromeric regions share conserved centromere-specific satellite motifs with different copy numbers and structures.In addition,the similarity of CentO repeats in the same chromosome is higher than across chromosomes,supporting a model of local expansion and homogenization.Both genomes have over 395 non-TE genes located in centromere regions,of which∼41%are actively transcribed.Two large structural variants at the end of chromosome 11 affect the copy number of resistance genes between the two genomes.The availability of the two gap-free genomes lays a solid foundation for further understanding genome structure and function in plants and breeding climate-resilient varieties. | Jia-Ming Song Wen-Zhao Xie Shuo Wang Yi-Xiong Guo Dal-Hoe Koo Dave Kudrna Chenbo Gong Yicheng Huang Jia-Wu Feng Wenhui Zhang Yong Zhou Andrea Zuccolo Evan Long Seunghee Lee Jayson Talag Run Zhou Xi-Tong Zhu Daojun Yuan Joshua Udall Weibo Xie Rod AWing Qifa Zhang Jesse Poland Jianwei Zhang Ling-Ling Chen | 2021 | Molecular Plant2021，14，10： | 9 |
| 2 | White matter abnormalities in bipolar disorder: insights from diffusion tensor imaging studies显示文摘 | Heng S Song AW Sim K | 2010 | Neural Transm2010，117，： | 1 |
| 3 | Cerebral white matter integrity and cognitive aging: contributions from diffusion tensor imaging 显示文摘 | Madden D J Bennett I J Song AW | 2009 | Neuro- psyehol Rev2009，19，4： | 1 |
| 4 | Risk factors of peri- toneal recurrence and outcome of resected peritoneal recur- rence after liver resection in hepatocellular carcinoma : review of 1222 cases of hepatectomy in a tertiary institution显示文摘 | KOW AW KWON CH SONG S | 2012 | Ann Surg Oncol2012，19，7： | 1 |
| 5 | Functional activation using apparent diffusion coefficient dependent contrast allows better spatial localization to the neuronal activity:evidence using diffusion tensor imaging and fiber tracking显示文摘 | Song AW Harshbarger T Li T | 2003 | Neuroimage2003，20，2： | 1 |
| 6 | Surgical outcomes of 230 resected hilar cholangiocarcinoma in a single centre显示文摘 | Song SC Choi DW Kow AW | | 0，，： | 1 |
| 7 | Segmented spin-echo pulses to increase fMR signal;repeated intrinsic diffusional enhancement显示文摘 | Mao H Muthupillai R | 1999 | Magn Reson Mde1999，42，4： | 1 |
| 8 | Risk factors of peri- toneal recurrence and outcome of resected peritoneal re- currence after liver resection in hepatocellular carcino- ma: review of 1222 cases of hepatectomy in a tertiary 显示文摘 | Kow AW Kwon CH Song S | 2012 | Ann Surge Oncol2012，19，7： | 1 |
| 9 | Risk factors of peritoneal recurrence and outcome of resected peritoneal recurrence after liver resection in hepatocellular carcinoma: review of 1222 cases of hepatectomy in a tertiary institution 显示文摘 | Kow AW Kwon CH Song S | 2012 | Ann Snrg Oncol2012，19，7： | 1 |
| 10 | Mechanism of fat-induced hepatic gluconeogenesis: effect of mefformin显示文摘 | Song S Andrikopoulos S Filippis C Thorbum AW Khan D Proietto J | 2001 | Am J Physiol Endocfinol Metab2001，281，2： | 1 |
| 11 | Diffusion tensor imaging fiber tracking with local tissue property sensitivity:phantom and in vivo validation显示文摘 | Chen B Song AW | | 0，，01： | 1 |
| 12 | Zircons from rodingite in the Western Tianshan serpentinite complex:Mineral chemistry and U-Pb ages define nature and timing of rodingitization显示文摘 | Li Xuping Zhang Lifei Simon AW Song Biao Liu Xiaoming | | 0，，： | 1 |
| 13 | Functional activation using apparent diffusion coefficient dependent contrast allows better spatial localization to the neuronal activity:evidence using diffusion tensor imaging and fiber tracking显示文摘 | Harshbarger T Li T | 2003 | Neuroimage2003，20，： | 1 |
| 14 | Linking hemodynamie and electrophysiological measures of brain activity: evidence from functional MRI and intracranial field potentials 显示文摘 | Huettel SA McKeown M J Song AW | 2004 | Cereb Cortex2004，14，2： | 1 |
| 15 | Rapid and genomie biological responses are mediated by different shapes of the agonist steroid hormone 1,25(OH)2 vitamin D3显示文摘 | Norman AW Song XD Zanello L | 1999 | Steroids1999，64，： | 1 |
| 16 | Role of caudate lobectomy in type ]a and ll]b hilar cholangioearcinoma: a 15-year experi- ence in a tertiary institution 显示文摘 | Kow AW Wook CD Song SC | 2012 | World J Surg2012，36，5： | 1 |
| 17 | Increasing value and reducing waste : addressing inaccessible research 显示文摘 | Chan AW Song FJ Vickers A | 2014 | The Lancet2014，383，9913： | 1 |
| 18 | Binding of mouse VL30 retrotransposon RNA to PSF protein induces genes repressed by PSF:Effects on steroidogenesis and oncogenesis显示文摘 | Song X Sui AW Garen A | 2004 | PNAS2004，，101： | 1 |
| 19 | Role of caudate lobectomy in type ill A and ill B hilar cholangiocarcinoma: a 15-year experience in a tertiary institution显示文摘 | Kow AW Wook CD Song SC | 2012 | World J Surg2012，36，5： | 1 |
| 20 | Experience - dependent changes in cerebeUar contributions to motor sequence learning 显示文摘 | Doyon J Song AW Karni A | 2002 | PNAS2002，99，： | 1 |
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