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| 1 | DNA Damage-Induced Transcription of Transposable Elements and Long Non-coding RNAs in Arabidopsis Is Rare and ATM-Dependent显示文摘跟随 DNA 损坏或其它压力的 transposable 元素(TE ) 的正式就职和动员在初核质和优核质被报导了。最近,真核细胞的 TE 经常与长非编码的 RNA (lncRNAs ) 被联系,这被发现,许多哪个也是由应力的 upregulated。然而, TE 和 lncRNAs 的 DNA 导致损坏的 transcriptional 激活是否偶发地发生或是同步、染色体宽的回答,是未知的。这里,我们调查了 Arabidopsis 的 transcriptome 野类型(WT ) 并且混乱毛细管扩张变异(atm ) 异种在 DNA 的正式就职以后种 3 h 损坏。在 WT, 5.2% 编码蛋白质的基因的表示是,在 atm 植物改变的 ≥2-fold,仅仅, 2.6% 这些基因被调整,并且基因的反应把修理,复制,和房间周期与 DNA 联系了大部分被失去。相反,仅仅,不到 0.6% TE 和 lncRNAs 回答在 WT 植物的损坏,和他们的 ≥95% 的规定是 ATM 依赖的到 DNA。ATM 下游的因素 BRCA1, DRM1, JMJ30, AGO2,和 ATM 独立的 AGO4 参予单个 TE 和 lncRNAs 的规定。显著地,邻近 DNA 损坏应答的 TE 和 lncRNAs 的定位的编码蛋白质的基因经常是 coexpressed,它与通常近定位到基因的 TE 和 lncRNAs 作为控制元素工作的假设一致。 | Zhenxing Wang Rainer Schwacke Reinhard Kunze | 2016 | Molecular Plant2016，9，8： | 2 |
| 2 | MapMan4: A Refined Protein Classification and Annotation Framework Applicable to Multi-Omics Data Analysis显示文摘Genome sequences from over 200 plant species have already been published, with this number expected to increase rapidly due to advances in sequencing technologies. Once a new genome has been assembled and the genes identified, the functional annotation of their putative translational products, proteins, using ontologies is of key importance as it places the sequencing data in a biological context. Furthermore, to keep pace with rapid production of genome sequences, this functional annotation process must be fully automated. Here we present a redesigned and significantly enhanced MapMan4 framework, together with a revised version of the associated online Mercator annotation tool. Compared with the original MapMan, the new ontology has been expanded almost threefold and enforces stricter assignment rules. This framework was then incorporated into Mercator4, which has been upgraded to reflect current knowledge across the land plant group, providing protein annotations for all embryophytes with a comparably high quality. The annotation process has been optimized to allow a plant genome to be annotated in a matter of minutes. The output results continue to be compatible with the established MapMan desktop application. | Rainer Schwacke Gabriel Y.Ponce-Soto Kirsten Krause Anthony M.Bolger Borjana Arsova Asis Hallab Kristina Gruden Mark Stitt Marie E.Bolger Bjorn Usadel | 2019 | Molecular Plant2019，12，6： | 2 |
| 3 | LeProT1, a transproter for proline, glycine betaine and ~-amino butyric acid in tomato pollen 显示文摘 | SCHWACKE R GRALLATH S BRCITKREUZ K E | 1999 | The Plant Cell1999，11，3： | 1 |
| 4 | CS2 blinds in brassica crops: false positive results in the dithiocarbamate residue analysis by the acid digestion method 显示文摘 | PERZ R C VAN LISHAUT H SCHWACK W | 2000 | J Agric food Chem2000，48，： | 1 |
| 5 | Analysis of carbendazim, benomyl, thiophanate methyl and 2, 4-dichlorophenoxy acetic acid in fruits and vegetables after supercritical fluid extraction显示文摘 | Anastassiades M Schwack W | 1998 | Journal of Chromatography A1998，825，1： | 1 |
| 6 | Fungicides and photochemistry : photodegradation of the dicarboximide fungicide iprodione 显示文摘 | SCHWACK W BOURGEOIS B WALKER F | 1995 | Chemosphere1995，31，4： | 1 |
| 7 | Fungicides and photochemistry : photodegradation of the dicarboximide fungicide procymidone显示文摘 | SCHWACK W BOURGEOIS B WALKER F | 1995 | Chemosphere1995，31，9： | 1 |
| 8 | Transcription analysis of Arabidopsis membrane transporters and hormone pathways during developmental and induced leaf senescence显示文摘 | Graaff E van tier Schwacke R Schneider A | 2006 | Plant Physiol2006，141，： | 1 |
| 9 | Fungicides and photo chemistry: photodegradation of the dicarboximidefungicide vinclozolin显示文摘 | SCHWACK W WALKER F BOURGEOIS B | 1995 | J Agric Food Chem1995，43，12： | 1 |
| 10 | Analysis of carbendazim,benomyl,thiophanate methyl and 2,4-dichlorophenoxyacetic acid in fruits and vegetables after supercritical fluid extraction显示文摘 | ANASTASSIADES M SCHWACK W | | 0，，01： | 1 |
| 11 | Long-term outcome of AV node modulation in 387 consecutive patients with AV nodal reentrant tachycardia显示文摘 | Schwacke H Brandt A Rameken M | 2002 | Z Kardiol2002，91，5： | 1 |
| 12 | Determination of isopropyhhioxanthone(ITX) in milk, yoghurt and fat by HPTLC - FLD, HPTLC- ESI/MS and HPTLC- DART/MS显示文摘 | MORLOCK G SCHWACK W | 2006 | Anal Bioanal Chem2006，385，： | 1 |
| 13 | Residue Analysis of Dithiocarbamate Fungicides显示文摘 | CRNOGORAC G SCHWACK W | 2009 | Trac-Trends in Analytical Chemistry2009，28，1： | 1 |
| 14 | LeProT1, a transporter for proline, glycine-betaine and γ-aminobutyric acid in tomato pollina显示文摘 | Schwacke R Grallath S Breitkreuz KE et ol | 1999 | Plant Cell1999，11，： | 1 |
| 15 | Transcription analysis of arabidopsis membrane transporters and hormone pathways during developmental and induced leaf senescence显示文摘 | Eric van der Graaff Schwacke R Schneider A | 2006 | Plant Physiol2006，，141： | 1 |
| 16 | Fungal elicitor induce a transient release of active oxygen species from cultured spruce cells that is dependent on Ca^2+ and protein-kinase activity 显示文摘 | Schwacke R Hager A | 1992 | planta1992，187，791： | 1 |
| 17 | Photochemistry of parathion in the plant cuticle environment: model reaction in the 12-hydroxylstearate显示文摘 | SCHWACK W ANDLAUER W | 1994 | Pesticide Science1994，40，3： | 1 |
| 18 | Analysis of carbendazim, benomyl, thiophanate methyl and 2,4-dichlorophenoxyacetic acid in fruits and vegetables after supercritical fluid extraction显示文摘 | Anastassiades M Schwack W | 1998 | J Chromatogr A1998，825，1： | 1 |
| 19 | iQuantitator: a tool for protein expression inference using iTRAQ 显示文摘 | Schwacke J H Hill E G Krug E L | 2009 | BMC Bioinformatics2009，10，： | 1 |
| 20 | Analysis of carbendaxim,benomyl,thiophanate methyl and 2,4-diehlorophenoxyace-tie acid in fruits and vegetables after supercritical fluid extractiou显示文摘 | Anastassiades M Schwack W | | 0，，01： | 1 |
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