|
|
|
题名
|
作者
|
年代
|
出处
|
被引量
|
| 1 | Families of Sordariomycetes显示文摘Sordariomycetes is one of the largest classes of Ascomycota that comprises a highly diverse range of fungi characterized mainly by perithecial ascomata and inoperculate unitunicate asci.The class includes many important plant pathogens,as well as endophytes,saprobes,epiphytes,coprophilous and fungicolous,lichenized or lichenicolous taxa.They occur in terrestrial,freshwater and marine habitats worldwide.This paper reviews the 107 families of the class Sordariomycetes and provides a modified backbone tree based on phylogenetic analysis of four combined loci,with a maximum five representative taxa from each family,where available.This paper brings together for the first time,since Barrs’1990 Prodromus,descriptions,notes on the history,and plates or illustrations of type or representative taxa of each family,a list of accepted genera,including asexual genera and a key to these taxa of Sordariomycetes.Delineation of taxa is supported where possible by molecular data.The outline is based on literature to the end of 2015 and the Sordariomycetes now comprises six subclasses,32 orders,105 families and 1331 genera.The family Obryzaceae and Pleurotremataceae are excluded from the class. | Sajeewa S.N.Maharachchikumbura Kevin D.Hyde E.B.Gareth Jones E.H.C.McKenzie Jayarama D.Bhat Monika C.Dayarathne Shi-Ke Huang Chada Norphanphoun Indunil C.Senanayake Rekhani H.Perera Qiu-Ju Shang Yuanpin Xiao Melvina J.D’souza Sinang Hongsanan Ruvishika S.Jayawardena Dinushani A.Daranagama Sirinapa Konta Ishani D.Goonasekara Wen-Ying Zhuang Rajesh Jeewon Alan J.L.Phillips Mohamed A.Abdel-Wahab Abdullah M.Al-Sadi Ali H.Bahkali Saranyaphat Boonmee Nattawut Boonyuen Ratchadawan Cheewangkoon Asha J.Dissanayake Jichuan Kang Qi-Rui Li Jian Kui Liu Xing Zhong Liu Zuo-Yi Liu JJennifer Luangsa-ard Ka-Lai Pang Rungtiwa Phookamsak Itthayakorn Promputtha Satinee Suetrong Marc Stadler Tingchi Wen Nalin N.Wijayawardene | 2016 | Fungal Diversity2016，，4： | 3 |
| 2 | The numbers of fungi:are the most speciose genera truly diverse?显示文摘Fungi play vital roles in ecosystems as endophytes,pathogens and saprobes.The current estimate of fungal diversity is highly uncertain,ranging from 1.5 to 12 million,but only around 150,000 species have been named and classified to date.Since the introduction of DNA based methods for species identification,the number of newly described taxa has increased from approximately 1000 to around 2000 yearly.This demonstrates the importance of DNA based methods to identify and distin-guish species,especially cryptic species.Many novel species from recent studies have been found in historically understudied regions and habitats,but these still represent only a small percentage of the estimated species.In this paper,we examine 16 genera from the top 40 most speciose genera as listed in Species Fungorum as case studies to examine the diversity of taxa in each genus.The genera treated herein are Cercospora,Diaporthe,Meliola,Passalora,Phyllachora,Phyllosticta,Pseudocer-cospora,Ramularia(ascomycetes)and Cortinarius,Entoloma,Inocybe,Marasmius,Psathyrella,Puccinia,Russula,Uromyces(basidiomycetes).We critically evaluate the number of species in these genera and correlate these numbers with the number of entries in GenBank.We introduce 18 new species Apiospora multiloculata,Candolleomyces thailandensis,Cortinarius acutoproximus,Cortinarius melleoalbus,Cortinarius pacificus,Cortinarius parvoacetosus,Diaporthe guizhouensis,Entoloma pseudosubcorvinum,Inocybe meirensongia,Marasmius albulus,Marasmius obscuroaurantiacus,Meliola camporesii,Phyl-lachora siamensis,Phyllosticta doitungensis,Picipes yuxiensis,Pseudocercospora vignae,Puccinia maureanui and Russula inornata.We also introduce a new record of Candolleomyces cladii-marisci and Inocybe iringolkavensis.We discuss the genera Colletotrichum and Pleurotus that are speciose,but do not occur in the top 40.We hypothesize whether there might be more species in these genera and discuss why these genera have some of the largest number of species. | Chitrabhanu S.Bhunjun Tuula Niskanen Nakarin Suwannarach Nopparat Wannathes Yi-Jyun Chen Eric H.C.McKenzie Sajeewa S.N.Maharachchikumbura Bart Buyck Chang-Lin Zhao Yu-Guang Fan Jing-Yi Zhang Asha J.Dissanayake Diana S.Marasinghe Ruvishika S.Jayawardena Jaturong Kumla Mahajabeen Padamsee Ya-Ya Chen Kare Liimatainen Joseph F.Ammirati Chayanard Phukhamsakda Jian-Kui Liu Wiphawanee Phonrob Émile Randrianjohany Sinang Hongsanan Ratchadawan Cheewangkoon Digvijayini Bundhun Surapong Khuna Wen-Jie Yu Lun-Sha Deng Yong-Zhong Lu Kevin D.Hyde Saisamorn Lumyong | 2022 | Fungal Diversity2022，，3： | 1 |
| 3 | Uncovering the hidden taxonomic diversity of fungi in Oman显示文摘Hot desert regions are undoubtedly challenging to fungal survival on the Arabian Peninsula.Fungi are,however,recognized as the most stress-resistant organisms among all eukaryotes,which could be a result of the rapid evolution of distinct species.Our current understanding of these microorganisms is derived from studies examining only a fraction of the overall fungal diversity.Therefore,further studies are needed to understand the diversity of fungi in desert regions.This paper highlights the taxonomy of several unusual fungal genera collected in a range of aquatic and terrestrial environments in Oman.These taxa were identified based on phylogenetic analyses of nuclear ribosomal DNA(rDNA)(LSU,SSU and ITS)and protein-coding genes(TEF,RPB2 and TUB),plus morphological comparisons.Phylogenetic analyses,including the presently recognized genera in Patellariales resulted in splitting the order into four clades in Dothideomycetes.The new family Holmiellaceae and new order Holmiellales are introduced to include Holmiella.Species of Homortomycetaceae form a well-supported and distinct clade and raise it to Homortomycetales ordo novus.Omania(Halojulellaceae),Desertiserpentica(Lophiostomata-ceae)and Montanitestudina(Testudinaceae)are described as novel genera in Dothideomycetes.A synnematous hyphomycete with basidiomycetous affinity(Corticiales)was also identified and described as Basidiodesertica.Additionally,an asexual morph was observed for Holmiella junipericola;Patellaria quercus is synonymized under P.atrata,and seven new species are described. | Sajeewa S.N.Maharachchikumbura Dhanushka N.Wanasinghe Ratchadawan Cheewangkoon Abdullah M.Al-Sadi | 2021 | Fungal Diversity2021，，1： | 1 |
| 4 | Notes,outline and divergence times of Basidiomycota显示文摘The Basidiomycota constitutes a major phylum of the kingdom Fungi and is second in species numbers to the Ascomycota.The present work provides an overview of all validly published,currently used basidiomycete genera to date in a single document.An outline of all genera of Basidiomycota is provided,which includes 1928 currently used genera names,with 1263 synonyms,which are distributed in 241 families,68 orders,18 classes and four subphyla.We provide brief notes for each accepted genus including information on classification,number of accepted species,type species,life mode,habitat,distribution,and sequence information.Furthermore,three phylogenetic analyses with combined LSU,SSU,5.8s,rpb1,rpb2,and ef1 datasets for the subphyla Agaricomycotina,Pucciniomycotina and Ustilaginomycotina are conducted,respectively.Divergence time estimates are provided to the family level with 632 species from 62 orders,168 families and 605 genera.Our study indicates that the divergence times of the subphyla in Basidiomycota are 406-430 Mya,classes are 211-383 Mya,and orders are 99-323 Mya,which are largely consistent with previous studies.In this study,all phylogenetically supported families were dated,with the families of Agaricomycotina diverging from 27-178 Mya,Pucciniomycotina from 85-222 Mya,and Ustilaginomycotina from 79-177 Mya.Divergence times as additional criterion in ranking provide additional evidence to resolve taxonomic problems in the Basidiomycota taxonomic system,and also provide a better understanding of their phylogeny and evolution. | Mao-Qiang He Rui-Lin Zhao Kevin D.Hyde Dominik Begerow Martin Kemler Andrey Yurkov Eric H.C.McKenzie Olivier Raspe Makoto Kakishima Santiago Sanchez-Ramırez Else C.Vellinga Roy Halling Viktor Papp Ivan V.Zmitrovich Bart Buyck Damien Ertz Nalin N.Wijayawardene Bao-Kai Cui Nathan Schoutteten Xin-Zhan Liu Tai-Hui Li Yi-Jian Yao Xin-Yu Zhu An-Qi Liu Guo-Jie Li Ming-Zhe Zhang Zhi-Lin Ling Bin Cao Vladimir Antonin Teun Boekhout Bianca Denise Barbosa da Silva Eske De Crop Cony Decock Balint Dima Arun Kumar Dutta Jack W.Fell Jozsef Geml Masoomeh Ghobad-Nejhad Admir J.Giachini Tatiana B.Gibertoni Sergio P.Gorjon Danny Haelewaters Shuang-Hui He Brendan P.Hodkinson Egon Horak Tamotsu Hoshino Alfredo Justo Young Woon Lim Nelson Menolli Jr Armin Mesic Jean-Marc Moncalvo Gregory M.Mueller La szlo G.Nagy RHenrik Nilsson Machiel Noordeloos Jorinde Nuytinck Takamichi Orihara Cheewangkoon Ratchadawan Mario Rajchenberg Alexandre G.S.Silva-Filho Marcelo Aloisio Sulzbacher Zdenko Tkalcec Ricardo Valenzuela Annemieke Verbeken Alfredo Vizzini Felipe Wartchow Tie-Zheng Wei Michael WeiB Chang-Lin Zhao Paul M.Kirk | 2019 | Fungal Diversity2019，，6： | 0 |
| 5 | Integrative approaches for species delimitation in Ascomycota显示文摘Biodiversity loss from disturbances caused by human activities means that species are disappearing at an ever increasing rate.The high number of species that have yet to be described have generated extreme crisis to the taxonomist.Therefore,more than in any other era,effective ways to discover and delimitate species are needed.This paper reviews the historically fore-most approaches used to delimit species in Ascomycota,the most speciose phylum of Fungi.These include morphological,biological,and phylogenetic species concepts.We argue that a single property to delineate species boundaries has various defects and each species concept comes with its own advantages and disadvantages.Recently the rate of species discovery has increased because of the advancement of phylogenetic approaches.However,traditional phylogenetic methods with few gene regions lack species-level resolution,and do not allow unambiguous conclusions.We detail the processes that affect gene tree heterogeneity,which acts as barriers to delimiting species boundaries in classical low-rank phylogenies.So far,limited insights were given to the DNA-based methodologies to establish well-supported boundaries among fungal species.In addition to reviewing concepts and methodologies used to delimit species,we present a case study.We applied differ-ent species delimitation methods to understand species boundaries in the plant pathogenic and cryptic genus Phyllosticta(Dothideomycetes,Botryosphaeriales).Several DNA-based methods over-split the taxa while in some methods several taxa fall into a single species.These problems can be resolved by using multiple loci and coalescence-based methods.Further,we discuss integrative approaches that are crucial for understanding species boundaries within Ascomycota and provide several examples for ideal and pragmatic approaches of species delimitation. | Sajeewa S.N.Maharachchikumbura Yanpeng Chen Hiran A.Ariyawansa Kevin D.Hyde Danny Haelewaters Rekhani H.Perera Milan C.Samarakoon Dhanushka N.Wanasinghe Danilo E.Bustamante Jian-Kui Liu Daniel P.Lawrence Ratchadawan Cheewangkoon Marc Stadler | 2021 | Fungal Diversity2021，，4： | 0 |
| 6 | Defining a species in fungal plant pathology:beyond the species level显示文摘In plant pathology,the correct naming of a species is essential for determining the causal agents of disease.Species names not only serve the general purpose of concise communication,but also are critical for effective plant quarantine,prevent-ing the introduction of new pathogens into a territory.Many phytopathogenic genera have multiple species and,in several genera,disagreements between the multiple prevailing species concept definitions result in numerous cryptic species.Some of these species were previously called by various names;forma speciales(specialised forms),subspecies,or pathotypes.However,based on new molecular evidence they are being assigned into new species.The frequent name changes and lack of consistent criteria to delineate cryptic species,species,subspecies,forms,and races create increasing confusion,often making communication among biologists arduous.Furthermore,such ambiguous information can convey misleading evo-lutionary concepts and species boundaries.The aim of this paper is to review these concepts,clarify their use,and evaluate them by referring to existing examples.We specifically address the question,“Do plant pathogens require a different ranking system?”We conclude that it is necessary to identify phytopathogens to species level based on data from multiple approaches.Furthermore,this identification must go beyond species level to clearly classify hitherto known subspecies,forms and races.In addition,when naming phytopathogenic genera,plant pathologists should provide more information about geographic locations and host ranges as well as host specificities for individual species,cryptic species,forms or races.When describing a new phytopathogen,we suggest that authors provide at least three representative strains together with pathogenicity test results.If Koch’s postulates cannot be fulfilled,it is necessary to provide complementary data such as associated disease severity on the host plant.Moreover,more sequenced collections of species causing diseases should be published in order to stabilise the boundaries of cryptic species,species,subspecies,forms,and races. | Ishara S.Manawasinghe Alan J.L.Phillips Jianping Xu Abhaya Balasuriya Kevin D.Hyde Łukasz Stępień Dulanjalee L.Harischandra Anuruddha Karunarathna Jiye Yan Janith Weerasinghe Mei Luo Zhangyong Dong Ratchadawan Cheewangkoon | 2021 | Fungal Diversity2021，，4： | 0 |
您所在的机构暂未开通此部分的功能，请联系管理员