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| 1 | QTL IciMapping:Integrated software for genetic linkage map construction and quantitative trait locus mapping in biparental populations显示文摘QTL Ici Mapping is freely available public software capable of building high-density linkage maps and mapping quantitative trait loci(QTL) in biparental populations. Eight functionalities are integrated in this software package:(1) BIN: binning of redundant markers;(2) MAP: construction of linkage maps in biparental populations;(3) CMP: consensus map construction from multiple linkage maps sharing common markers;(4) SDL: mapping of segregation distortion loci;(5) BIP: mapping of additive, dominant, and digenic epistasis genes;(6) MET: QTL-by-environment interaction analysis;(7) CSL: mapping of additive and digenic epistasis genes with chromosome segment substitution lines; and(8) NAM: QTL mapping in NAM populations. Input files can be arranged in plain text, MS Excel 2003, or MS Excel 2007 formats. Output files have the same prefix name as the input but with different extensions. As examples, there are two output files in BIN, one for summarizing the identified bin groups and deleted markers in each bin, and the other for using the MAP functionality. Eight output files are generated by MAP, including summary of the completed linkage maps, Mendelian ratio test of individual markers, estimates of recombination frequencies, LOD scores, and genetic distances, and the input files for using the BIP, SDL,and MET functionalities. More than 30 output files are generated by BIP, including results at all scanning positions, identified QTL, permutation tests, and detection powers for up to six mapping methods. Three supplementary tools have also been developed to display completed genetic linkage maps, to estimate recombination frequency between two loci,and to perform analysis of variance for multi-environmental trials. | Lei Meng Huihui Li Luyan Zhang Jiankang Wang | 2015 | The Crop Journal2015，3，3： | 174 |
| 2 | Targeting mitochondrial biogenesis for preventing and treating insulin resistance in diabetes and obesity:Hope from natural mitochondrial nutrients显示文摘Insulin resistance is an important feature of type 2 diabetes and obesity. The underlying mechanisms of insulin resistance are still unclear. Mitochondrial dysfunction, | Jiankang Liu Institute of Mitochondrial Biology and Medicine, Xi’an Jiaotong University School of Life Science and Technology, Xi’an 710049, China | 2009 | 生物物理学报2009，25，S1： | 24 |
| 3 | The Ore-forming Mechanism of the Jiajika Pegmatite-Type Rare Metal Deposit in Western Sichuan Province:Evidence from Isotope Dating显示文摘花岗石的伟晶岩被部分结晶化或由花岗石的岩浆的液体 immiscibility 通常认为到形式;然而,这些建议主要基于液体的分析并且融化包括。这里,我们使用 Jiajika 伟晶岩存款,在亚洲的最大的锂辉石存款,调查矿石形成的案例研究处理使用同位素标明日期。从用多重方法的 Jiajika 存款的一件单个花岗石样品的勇敢给了锆石 UPb 208.4 | LI Jiankang WANG Denghong CHEN Yuchuan | 2013 | Acta Geologica Sinica(English Edition)2013，87，1： | 23 |
| 4 | The Metallogenetic Regularities of Lithium Deposits in China显示文摘Lithium resources support the development of high-technology industries. China has abundant lithium resources which are mainly distributed in Tibet,Qinghai,Sichuan and Jiangxi. Salt lakes in China have significant lithium reserves,but lithium is mainly produced from hard rock lithium deposits because the extraction from salt lakes requires further improvements. The hard rock lithium deposits mainly occur in granitic pegmatite in the Altay region of Xinjiang and the Jiajika deposit in western Sichuan Province; they mainly formed in the Mesozoic and occurred in a relatively stable stage during orogenic processes. On the basis of the information from 151 lithium deposits or spots,14 lithium metallogenic series were identified,and granitic pegmatite,granite,and sedimentary types were considered to be the main prediction types of lithium resources. Twelve lithium mineralization belts were divided and a series of maps showing the lithium metallogenetic regularity in China were drawn. We conclude that the hard rock and brine type of lithium resources possibly have a similar lithium source related to magmatism. The metallogenic features of the lithium in China were related with the distinct history of tectonic-magmatic activity in China. This study benefits the assessment of,and prospecting for,lithium resources in China. | LI Jiankang ZOU Tianren LIU Xifang WANG Denghong DING Xin | 2015 | Acta Geologica Sinica(English Edition)2015，89，2： | 22 |
| 5 | Construction of habitat suitability models(HSMs) for benthic macroinvertebrate and their applications to instream environmental flows:A case study in Xiangxi River of Three Gorges Reservior region,China显示文摘Based on a long-term ecological monitoring, the present study chose the most dominant benthic macroinvertebrate (Baetis spp.) as tar- get organisms in Xiangxi River, built the habitat suitability models (HSMs) for water depth, current velocity and substrate, respectively, which is the first aquatic organisms model for habitat suitability in the Chinese Mainland with a long-term consecutive in situ measurement. In order to protect the biointegrity and function of the river ecosystem, the theory system of instream environmental flow should be cat- egorized into three hierarchies, namely minimum required instream flow (hydrological level), minimum instream environmental flow (bio- species level), and optimum instream environmental flow (ecosystem level). These three hierarchies of instream environmental flow models were then constructed with the hydrological and weighted usable area (WUA) method. The results show that the minimum required instream flow of Xiangxi River calculated by the Tennant method (10% of the mean annual flow) was 0.615 m3 s 1; the minimum instream environmental flow accounted for 19.22% of the mean annual flow (namely 1.182 m3 s 1), which was the damaged river channel flow in the dry season; and 42.91% of the mean annual flow (namely 2.639 m3 s 1) should be viewed as the optimum instream environmental flow in order to protect the health of the river ecosystem, maintain the instream biodiversity, and reduce the impact of small hydropower stations nearby the Xiangxi River. We recommend that the hydrological and biological methods can help establish better instream environmental flow models and design best management practices for use in the small hydropower station project. | Fengqing Li Qinghua Cai Xiaocheng Fu Jiankang Liu | 2009 | Progress in Natural Science:Materials International2009，19，3： | 18 |
| 6 | EFFECT OF DAMAGE EVOLUTION ON POISSON'S RATIO OF CONCRETE UNDER SULFATE ATTACK显示文摘Experimental results about concrete under sulfate attack are summarized,which include the variation of mass density of samples and velocity of ultrasonic wave propagating in samples.The evolution damage is analyzed in terms of the experimental results,and close attention is paid to the effect of damage evolution on Poisson's ratio.This study shows that Poisson's ratio is significantly affected by the concentration of solution and water-cement ratio.Poisson's ratio of concrete changes very little when the water-cement ratio is selected as 0.6 or 0.8,so that such change may be neglected.If water-cement is 0.4,however,the Poisson's ratio of the sample significantly changes.When the concrete sample of 0.4 water-cement ratio is immersed in sodium sulfate solution of 8% concentration for 285 days,Poisson's ratio increase 10.14% compared with its initial value.There exist a sensitive region and a non-sensitive region for the change rate of Poisson's ratio with respect to corrosion time.The change rate of Poisson's ratio monotonously decreases with corrosion time in the sensitive region;in the non-sensitive region,the change rate of Poisson's ratio is almost equal to zero. | Hui Song Jiankang Chen | 2011 | Acta Mechanica Solida Sinica2011，24，3： | 13 |
| 7 | Development of fractures in soft rock surrounding a roadway and their control显示文摘As the excavation of roadway,new fractures will be formed and the pre-existing fractures extend with the redistribution of stress in surrounding rocks.Eventually,fracture zone and bed separation are formed in rocks because of the developed fractures.Therefore,mastering the fracture evolution of surrounding rocks is very important to maintain the stability of roadway.The surrounding rocks of main haulage roadway in a certain coal mine is so broken and loose that the supporting is very difficult.Based on comprehensive analysis of the engineering geological conditions,a sight instrument was used to observe the fractures of internal surrounding rocks.Four indices,i.e.,the width of fracture zone W,the number of fractures n,the width of fractures d and rock fracture designation RFD,are put forward to evaluate the fracture development.According to the evolution rules of the soft rock roadway from this paper,control principles by stages and by regions are presented through the research.At the same time,the best time of grouting reinforcement is determined on the basis of fracture saturation.Field practice shows that the roadway can satisfy normal production during service periods by suitable first support and grouting reinforcement. | Li Xuehua Yao Qiangling Man Jiankang Chen Chaoqun He Lihui | 2011 | Mining Science and Technology2011，21，4： | 12 |
| 8 | Selective separation of Cu(Ⅱ),Zn(Ⅱ),and Cd(Ⅱ)by solvent extraction显示文摘试验性的调查在分离上被介绍 Cu (II ) , Zn (II ) ,和从锌的富有的硫酸盐 leachate 的 Cd (II ) 由溶剂抽取起炉渣。直角的实验的结果显示 LIX 984N 在 Cu ( II )的抽取高度选择、很有效,并且变化的分析显示参数的顺序根据他们对分离效率的影响是阶段比率> LIX 984N 集中> pH 价值>抽取时间。为铜抽取的最佳的条件作为 25% LIX 984N 集中,抽取时间的 7 min,阶段比率记帐的 3:2,和 pH = 被获得 1.7。Zn (II ) 和 Cd (II ) 的分离从 raffinate 在铜抽取以后被执行。有 di-2-ethylhexyl 的分离的比较分析磷的酸(D2EHPA ) , D2EHPA- tributylphosophate (TBP ) synergistic 提取系统,和 2-ethylhexyl 单音的 2-ethylhexyl 酉旨(HEHEHP ) 在 pH = 被做的磷的酸 2.0。有 D2EHPA 的抽取效率在被钠氢氧化物,并且 D2EHPA-TBP synergistic 提取以及 HEHEHP 皂化以后被改进,这被表明,在 Cd (II ) 上有一种优异选择到 Zn (II ) 。 | XIE Keng WEN Jiankang HUA Yixin RUAN Renman | 2008 | Rare Metals2008，27，3： | 11 |
| 9 | Geochemistry and spatial distribution of OIB and MORB in A’nyemaqen ophiolite zone: Evidence of Majixue-shan ancient ridge-centered hotspot显示文摘The mafic volcanic association is made up of OIB, E-MORB and N-MORB in the A'nyemaqen Paleozoic ophiolites. Compared with the same type rocks in the world, the mafic rocks generally display lower Nb/U and Ce/Pb ratios and some have Nb depletion and Pb enrichment. The OIB are LREE-enriched with (La/Yb)N =5―20, N-MORB are LREE-depleted with (La/Yb)N = 0.41―0.5. The OIB are featured by incompatible element enrichment and the N-MORB are obviously depleted with some metasomatic ef- fect, and E-MORB are geochemically intermediated. These rocks are distributed around the Majixue- shan OIB and gabbros in a thickness greater than a thousand meters and transitionally change along the ophiolite extension in a west-east direction, showing a symmetric distribution pattern as centered by the Majixueshan OIB, that is, from N-MORB, OIB and E-MORB association in the Dur'ngoi area to OIB in the Majixueshan area and then to N-MORB, OIB and E-MORB assemblage again in the Buqing- shan area. By consideration of the rock association, the rock spatial distribution and the thickness of the mafic rocks in the Majixueshan, coupled with the metasomatic relationship between the OIB and MORB sources, it can be argued that the Majixueshan probably corresponds to an ancient hotspot or an ocean island formed by mantle plume on the A'nyemaqeh ocean ridge, that is the ridge-centered hotspot, tectonically similar to the present-day Iceland hotspot. | GUO AnLin ZHANG GuoWei SUN YanGui ZHENG JianKang LIU Ye WANG JianQi | 2007 | Science China Earth Sciences2007，50，2： | 11 |
| 10 | Counteraction of ABA-Mediated Inhibition of Seed Germination and Seedling Establishment by ABA Signaling Terminator in Arabidopsis显示文摘Seed germination and seedling establishment are important for the reproductive success of plants,but seeds and seedlings typically encounter constantly changing environmental conditions.By inhibiting seed germination and post-germinative growth through the PYR1/PYL/RCAR ABA receptors and PP2C co-receptors,the phytohormone abscisic acid(ABA)prevents premature germination and seedling growth under unfavorable conditions.However,little is known about how the ABA-mediated inhibition of seed germination and seedling establishment is thwarted.Here,we report that ABA Signaling Terminator(ABT),a WD40 protein,efficiently switches off ABA signaling and is critical for seed germination and seedling establishment.ABT is induced by ABA in a PYR1/PYL/RCAR-PP2C-dependent manner.Overexpression of ABT promotes seed germination and seedling greening in the presence of ABA,whereas knockout of ABT has the opposite effect.We found that ABT interacts with the PYR1/PYL/RCAR and PP2C proteins,interferes with the interaction between PYR1/PYL4 and ABI1/ABI2,and hampers the inhibition of ABI1/ABI2 by ABA-bound PYR1/PYL4,thereby terminating ABA signaling.Taken together,our results reveal a core mechanism of ABA signaling termination that is critical for seed germination and seedling establishment in Arabidopsis. | Zhijuan Wang Ziyin Ren Chunhong Cheng Tao Wang Hongtao Ji Yang Zhao Zhiping Deng Liya Zhi Jingjing Lu Xinying Wu Shimin Xu Mengmeng Cao Hongtao Zhao Liu Liu Jiankang Zhu Xia Li | 2020 | Molecular Plant2020，13，9： | 10 |
| 11 | Application of Hydrothermal Diamond Anvil Cell to Homogenization Experiments of Silicate Melt Inclusions显示文摘The homogenization of silicate melt inclusions(SMIs), small droplets of silicate melt trapped in magmatic minerals, is an important component of petrogenetic and magmatic research. Conventional homogenization experiments on SMIs use microscope-mounted heating stages capable of producing high temperatures at 1 atm and cold-seal high-pressure vessels. Heating stages are generally used for SMIs with low internal pressures and allow in situ observations of the homogenization processes. In contrast, cold-seal high-pressure vessels are generally used to heat SMIs that have high internal pressures, although the homogenized SMIs can only be observed after quenching in this approach. Here we outline an alternative approach that uses a hydrothermal diamond anvil cell(HDAC) apparatus to homogenize SMIs. This is the only current method wherein phase changes in high-internal-pressure SMIs can be observed in situ during homogenization experiments, which represents an advantage over other conventional methods. Using an HDAC apparatus prevents high-internal-pressure SMIs from decrepitating during heating by elevating their external pressure, in addition to allowing in situ observations of SMIs. The type-V HDAC that is currently being used has a shorter distance between the sample chamber and the observation window than earlier types, potentially enabling continuous observation of the processes involved in heating and SMI homogenization through an objective lens with a long working distance. Homogenization experiments using HDAC require that a number of steps, including HDAC preparation, sample preparation, sample loading, preheating, and formal heating, be carefully followed. Homogenization experiments on SMIs within granite samples from the Jiajika pegmatite deposit(Sichuan, China) are best performed using an HDAC-based approach, because the elevated proper external pressure of these SMIs, combined with a short heating duration, helps to suppress material leakage and any reactions within the SMIs, in addition to allowing in situ observations during homogenization experiments. Furthermore, using the HDAC approach has other benefits: heating rates can be precisely controlled, wafer oxidization can be prevented, and samples can be subjected to in situ microbeam analysis. In summary, homogenization using HDAC provides more reliable results than those obtained using conventional heating equipment. Future developments will include improvements to the quenching method and temperature controls for the HDAC apparatus, thereby improving the utility of this approach for SMI homogenization experiments. | LI Jiankang LI Shenghu | 2014 | Acta Geologica Sinica(English Edition)2014，88，3： | 10 |
| 12 | Dissecting and Enhancing the Contributions of High-Molecular-Weight Glutenin Subunits to Dough Functionality and Bread Quality显示文摘Dear Editor, Seed storage proteins (SSPs) are frequently important determinants of crop quality traits (Shewry and Casey,1999).Dissecting and enhancing the genetic contributions of individual SSPs to their target traits are essential for effectively improving crop quality attributes.However,such a task is often difficult to accomplish,because SSPs are frequently expressed from multigene families and exhibit strong allelic variation.Consequently,detailed knowledge of the function of individual SSPs in crop quality trait is still limited.This scenario is well illustrated by high-molecular-weight glutenin subunits (HMWGSs),a complex family of SSPs that are involved in wheat enduse quality through affecting dough functionality (Békés,2012;Rasheed et al.,2014). | Yiwen Li Xuefi An Ran Yang Xiaomin Guo Guidong Yue Renchun Fan Bin Li Zhensheng Li Kunpu Zhang Zhenying Dong Luyan Zhang Jiankang Wang Xu Jia Hong-Qing Ling Aimin Zhang Xiangqi Zhang Daowen Wang | 2015 | Molecular Plant2015，8，2： | 9 |
| 13 | Flexible design of gradient multilayer nanofilms coated on carbon nanofibers by atomic layer deposition for enhanced microwave absorption performance显示文摘阻抗匹配为完成高效率的微波吸收器是重要的。象纯金属和碳 nanomaterials 那样的绝缘的损失材料的高传导性通常由于在吸收器和表情之间匹配的低阻抗导致差的吸收。因为他们的吸引人的特征,碳 nanostructures 很包括低密度,高表面区域,和好稳定性为高效率的吸收正在答应候选人。此处,新策略被建议改进作为一个例子用 electrospun 碳 nanofibers 绝缘的损失材料匹配的阻抗。碳 nanofibers 与明确地设计的坡度是涂的有逐渐地增加 electroconductibility 的多层的 nanofilms 由与不同艾尔 2 O 3 内容(偶氮) 旁边原子层免职。也就是,坡度 nanofilms 由绝缘的电影的五层组成纯艾尔 2 O 3, 偶氮(5:1,到艾尔 2 O 3), 纯 ZnO,偶氮(10:1 ) ,并且偶氮(20:1 ) 。万用的坡度电影用作中间的层调节在空气和碳 nanofiber 表面之间匹配的阻抗。因此,与讲道理地选择的厚度的电影显著地展出的坡度涂的碳 nanofibers 提高了微波吸收性能,和最佳的思考损失活动范围在有仅仅 1.8 公里的厚度的 16.2 GHz 的 58.5 dB。这个工作能进一步帮助理解阻抗匹配到微波吸收的贡献。我们的策略是一般的并且能被使用在新窗户中在另外的 fields.Open | Shichao Zhao Lili Yan Xiaodong Tian Yequn Liu Chaoqiu Chen Yunqin Li Jiankang Zhang Yan Song Yong Qin | 2018 | Nano Research2018，11，1： | 8 |
| 14 | Origin and Geological Significance of TTG Gneisses from the Maevatanana Greenstone Belt in North-Central Madagascar,and A Comparison with India显示文摘The Maevatanana greenstone belt in north-central Madagascar contains widespread exposures of tonalite-trondhjemite-granodiorite(TTG) gneisses,and is important for its concentrations of various metal deposits(e.g.,chromium,nickle,iron,gold).In this paper we report on the petrography,and major and trace element compositions of the TTG gneisses within the Berere Complex of the Maevatanana area,as well as LA-ICP-MS U-Pb ages and Lu-Hf isotopic compositions of zircons from the gneisses.The gneisses consist mainly of granitoid gneiss and biotite(±hornblende) plagiogneiss,and analysis of thin sections provides evidence of crushing,recrystallization,and metasomatism related to dynamic metamorphism.Samples have large variations in their major and trace element contents,with SiO_2 = 55.87-68.06 wt%,Al_2O_3 = 13.9-17.8 wt%,and Na_2O/K_2O =0.97-2.13.Geochemically,the granitoid gneisses and biotite plagiogneisses fall on a low-Al trondhjemite to granodiorite trend,while the biotite-hornblende plagiogneisses represent a high-Al tonalite TTG assemblage.Zircon U-Pb dating shows that the Berere Complex TTG gneisses formed at2.5-2.4 Ga.Most ε_(Hf(t)) values of zircons from the biotite(± hornblende) plagiogneisses are positive,while most ε_(Hf(t)) values from the granitoid gneisses are negative,suggesting a degree of crustal contamination.Two-stage Hf model ages suggest that the age of the protolith of the TTG gneisses was ca.3.4-2.6 Ga,representing a period of paleocontinent formation in the Mesoarchean.Geothermometries indicate the temperature of metamorphism of the TTG gneisses was 522-612℃.Based on these data,the protolith of the TTG gneisses is inferred to have formed during the development of a Mesoarchean paleocontinent that is now widely exposed as a TTG gneiss belt(mostly lower amphibolite facies) in the Maevatanana area,and which records a geological evolution related to the subduction of an ancient oceanic crust and the collision of microcontinents during the formation of the Rodinia supercontinent.The lithological similarity of Precambrian basement,the close ages of metamorphism within greenstone belts and the comparable distribution of metamorphic grade all show a pronounced Precambrian geology similarity between Madagascar and India,which can provide significative clues in understanding the possible Precambrian Supercontinent tectonics,and also important constraints on the correlation of the two continental fragments. | LI Peng LI Jiankang LIU Shanbao PEI Rongfu SHI Guanghai | 2017 | Acta Geologica Sinica(English Edition)2017，91，3： | 7 |
| 15 | The Statistical Power of Inclusive Composite Interval Mapping in Detecting Digenic Epistasis Showing Common F_2 Segregation Ratios显示文摘Epistasis is a commonly observed genetic phenomenon and an important source of variation of complex traits,which could maintain additive variance and therefore assure the long-term genetic gain in breeding.Inclusive composite interval mapping(ICIM) is able to identify epistatic quantitative trait loci(QTLs) no matter whether the two interacting QTLs have any additive effects.In this article,we conducted a simulation study to evaluate detection power and false discovery rate(FDR) of ICIM epistatic mapping,by considering F_2 and doubled haploid(DH) populations,different F_2 segregation ratios and population sizes.Results indicated that estimations of QTL locations and effects were unbiased,and the detection power of epistatic mapping was largely affected by population size,heritability of epistasis,and the amount and distribution of genetic effects.When the same likelihood of odd(LOD) threshold was used,detection power of QTL was higher in F_2 population than power in DH population;meanwhile FDR in F_2 was also higher than that in DH.The increase of marker density from 10 cM to 5 cM led to similar detection power but higher FDR.In simulated populations,ICIM achieved better mapping results than multiple interval mapping(MIM) in estimation of QTL positions and effect.At the end,we gave epistatic mapping results of ICIM in one actual population in rice(Oryza sativa L.). | Luyan Zhang Huihui Li Jiankang Wang | 2012 | Journal of Integrative Plant Biology2012，54，4： | 6 |
| 16 | Influences of solid particles on the formation of the third phase crud during solvent extraction显示文摘The influences of solid particles in leach solution on the formation of the third phase crud during solvent extrac-tion of copper were studied. Analyzed from the point of view of pH value and surface tension, the study results showed that the solid particle is one of the most important contributors for the formation of the third phase crud. During solvent extrac-tion, if the pH value was greater than 2.30, the number of solid particles in the mother solution increased, in which case the possibility of forming the third phase crud could also increase, and the interface tension value might grow in pace with the quantity of the third phase crud. | ZHENG Qi RUAN Renman WEN Jiankang SONG Yongsheng DONG Qinghai WU Minglin YAO Guocheng | 2007 | Rare Metals2007，26，1： | 6 |
| 17 | Ordering of high-density markers by the k-Optimal algorithm for the traveling-salesman problem显示文摘Construction of accurate and high-density linkage maps is a key research area of genetics.We investigated the efficiency of genetic map construction(MAP)using modifications of the k-Optimal(k-Opt)algorithm for solving the traveling-salesman problem(TSP).For TSP,different initial routes resulted in different optimal solutions.The most optimal solution could be found only by use of as many initial routes as possible.But for MAP,a large number of initial routes resulted in one optimal order.k-Opt using open route length gave a slightly higher proportion of correct orders than the method of adding one virtual marker and using closed route length.Recombination frequency(REC)and logarithm of odds(LOD)score gave similar proportions of correct order,higher than that given by genetic distance.Both missing markers and genotyping error reduced ordering accuracy,but the best order was still achieved with high probability by comparison of the optimal orders from multiple initial routes.Computation time increased rapidly with marker number,and 2-Opt took much less time than 3-Opt.The 2-Opt algorithm was compared with ordering methods used in two other software packages.The best method was 2-Opt using open route length as the criterion to identify the optimal order and using REC or LOD as the measure of distance between markers.We describe a unified software interface for using k-Opt in high-density linkage map construction for a wide range of genetic populations. | Luyan Zhang Huihui Li Lei Meng Jiankang Wang | 2020 | The Crop Journal2020，8，5： | 6 |
| 18 | Use of genomic selection and breeding simulation in cross prediction for improvement of yield and quality in wheat (Triticum aestivum L.)显示文摘In wheat breeding, it is a difficult task to select the most suitable parents for making crosses aimed at the improvement of both grain yield and grain quality. By quantitative genetics theory,the best cross should have high progeny mean and large genetic variance, and ideally yield and quality should be less negatively or positively correlated. Usefulness is built on population mean and genetic variance, which can be used to select the best crosses or populations to achieve the breeding objective. In this study, we first compared five models(RR-BLUP, Bayes A, Bayes B, Bayes ridge regression, and Bayes LASSO) for genomic selection(GS) with respect to prediction of usefulness of a biparental cross and two criteria for parental selection, using simulation. The two parental selection criteria were usefulness and midparent genomic estimated breeding value(GEBV). Marginal differences were observed among GS models. Parental selection with usefulness resulted in higher genetic gain than midparent GEBV. In a population of 57 wheat fixed lines genotyped with 7588 selected markers, usefulness of each biparental cross was calculated to evaluate the cross performance, a key target of breeding programs aimed at developing pure lines. It was observed that progeny mean was a major determinant of usefulness, but the usefulness ratings of quality traits were more influenced by their genetic variances in the progeny population. Near-zero or positive correlations between yield and major quality traits were found in some crosses, although they were negatively correlated in the population of parents. A selection index incorporating yield, extensibility, and maximum resistance was formed as a new trait and its usefulness for selecting the crosses with the best potential to improve yield and quality simultaneously was calculated. It was shown that applying the selection index improved both yield and quality while retaining more genetic variance in the selected progenies than the individual trait selection. It was concluded that combining genomic selection with simulation allows the prediction of cross performance in simulated progenies and thereby identifies candidate parents before crosses are made in the field for pure-line breeding programs. | Ji Yao Dehui Zhao Xinmin Chen Yong Zhang Jiankang Wang | 2018 | The Crop Journal2018，6，4： | 6 |
| 19 | Development of image-based wheat spike counter through a Faster R-CNN algorithm and application for genetic studies显示文摘Spike number(SN) per unit area is one of the major determinants of grain yield in wheat. Development of high-throughput techniques to count SN from large populations enables rapid and cost-effective selection and facilitates genetic studies. In the present study, we used a deep-learning algorithm, i.e., Faster Region-based Convolutional Neural Networks(Faster R-CNN) on Red-Green-Blue(RGB) images to explore the possibility of image-based detection of SN and its application to identify the loci underlying SN. A doubled haploid population of 101 lines derived from the Yangmai 16/Zhongmai 895 cross was grown at two sites for SN phenotyping and genotyped using the high-density wheat 660 K SNP array.Analysis of manual spike number(MSN) in the field, image-based spike number(ISN), and verification of spike number(VSN) by Faster R-CNN revealed significant variation(P < 0.001) among genotypes, with high heritability ranged from 0.71 to 0.96. The coefficients of determination(R^(2)) between ISN and VSN was 0.83, which was higher than that between ISN and MSN(R^(2)= 0.51), and between VSN and MSN(R^(2)= 0.50). Results showed that VSN data can effectively predict wheat spikes with an average accuracy of 86.7% when validated using MSN data. Three QTL Qsnyz.caas-4 DS, Qsnyz.caas-7 DS, and QSnyz.caas-7 DL were identified based on MSN, ISN and VSN data, while QSnyz.caas-7 DS was detected in all the three data sets. These results indicate that using Faster R-CNN model for image-based identification of SN per unit area is a precise and rapid phenotyping method, which can be used for genetic studies of SN in wheat. | Lei Li Muhammad Adeel Hassan Shurong Yang Furong Jing Mengjiao Yang Awais Rasheed Jiankang Wang Xianchun Xia Zhonghu He Yonggui Xiao | 2022 | The Crop Journal2022，10，5： | 5 |
| 20 | Wearable sensors for 3D upper limb motion modeling and ubiquitous estimation显示文摘Human motion capture technologies are widely used in interactive game and learning, animation, film special effects, health care, and navigation. Because of the agility, upper limb motion estimation is the most difficult problem in human motion capture. Traditional methods always assume that the movements of upper arm and forearm are independent and then estimate their movements separately; therefore, the estimated motion are always with serious distortion. In this paper, we propose a novel ubiquitous upper limb motion estimation method using wearable microsensors, which concentrates on modeling the relationship of the movements between upper arm and forearm. Exploration of the skeleton structure as a link structure with 5 degrees of freedom is firstly proposed to model human upper limb motion. After that, parameters are defined according to Denavit-Hartenberg convention, forward kinematic equations of upper limb are derived, and an unscented Kalman filter is invoked to estimate the defined parameters. The experimental results have shown the feasibility and effectiveness of the proposed upper limb motion capture and analysis algorithm. | Zhang, Zhiqiang Wong, Wai Choong Wu, Jiankang | 2011 | 控制理论与应用(英文版)2011，9，1： | 5 |
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