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| 1 | Analysis and characterization of the Salix suchowensis chloroplast genome显示文摘By screening sequence reads from the Salix suchowensis chloroplast(cp) genome that were generated by next-generation sequencing platforms, we assembled a complete circular pseudomolecule for the cp genome.This pseudomolecule is 155,508 bp long and has a typical quadripartite structure that contains two single copy regions, a large single copy region(LSC, 84,385 bp), and a small single copy region(SSC, 16,209 bp) separated by inverted repeat regions(IRs, 27,457 bp).Gene annotation revealed that the S.suchowensis cp genome encoded 119 unique genes, including four ribosome RNA genes, 30 transfer RNA genes, 82 protein-coding genes, and three pseudogenes.Analysis of the repetitive sequences revealed31 tandem repeats, 16 forward repeats, and five palindromic repeats.In addition, a total of 148 perfect microsatellites, which were characterized as A/T dominant in nucleotide composition, were detected.Significant shifting of the IR/SSC boundaries was revealed by comparing this cp genome with those of other rosid plants.We also constructed phylogenetic trees to demonstrate the phylogenetic position of S.suchowensis in Rosidae based on 66 orthologous protein-coding genes present in the cp genomes of 32 species.Sequencing 30 amplicons based on the pseudomolecule for experimental verification revealed99.88% accuracy for the S.suchowensis cp genome assembly.Therefore, we assembled a high-quality pseudomolecule of the S.suchowensis cp genome, which is a useful resource for facilitating development of this shrub willow into a more productive bioenergy crop. | Congrui Sun Jie Li Xiaogang Dai Yingnan Chen | 2018 | Journal of Forestry Research2018，29，4： | 3 |
| 2 | Response of PM_(2.5)-bound elemental species to emission variations and associated health risk assessment during the COVID-19 pandemic in a coastal megacity显示文摘The coronavirus(COVID-19)pandemic is disrupting the world from many aspects.In this study,the impact of emission variations on PM_(2.5)-bound elemental species and health risks associated to inhalation exposure has been analyzed based on real-time measurements at a remote coastal site in Shanghai during the pandemic.Most trace elemental species decreased significantly and displayed almost no diel peaks during the lockdown.After the lockdown,they rebounded rapidly,of which V and Ni even exceeded the levels before the lockdown,suggesting the recovery of both inland and shipping activities.Five sources were identified based on receptor modeling.Coal combustion accounted for more than 70%of the measured elemental concentrations before and during the lockdown.Shipping emissions,fugitive/mineral dust,and waste incineration all showed elevated contributions after the lockdown.The total non-carcinogenic risk(HQ)for the target elements exceeded the risk threshold for both children and adults with chloride as the predominant species contributing to HQ.Whereas,the total carcinogenic risk(TR)for adults was above the acceptable level and much higher than that for children.Waste incineration was the largest contributor to HQ,while manufacture processing and coal combustion were the main sources of TR.Lockdown control measures were beneficial for lowering the carcinogenic risk while unexpectedly increased the non-carcinogenic risk.From the perspective of health effects,priorities of control measures should be given to waste incineration,manufacture processing,and coal combustion.A balanced way should be reached between both lowering the levels of air pollutants and their health risks. | Guochen Wang Kan Huang Qingyan Fu Jia Chen Juntao Huo Qianbiao Zhao Yusen Duan Yanfen Lin Fan Yang Wenjie Zhang Hao Li Jian Xu Xiaofei Qin Na Zhao Congrui Deng | 2022 | Journal of Environmental Sciences2022，34，12： | 2 |
| 3 | Data-Driven Discovery in Mineralogy: Recent Advances in Data Resources, Analysis, and Visualization显示文摘Large and growing data resources on the diversity, distribution, and properties of minerals are ushering in a new era of data-driven discovery in mineralogy. The most comprehensive international mineral database is the IMA database, which includes information on more than 5400 approved mineral species and their properties, and the mindat.org data source, which contains more than 1 million species/locality data on minerals found at more than 300 000 localities. Analysis and visualization of these data with diverse techniques—including chord diagrams, cluster diagrams, Klee diagrams, skyline diagrams, and varied methods of network analysis—are leading to a greater understanding of the co-evolving geosphere and biosphere. New data-driven approaches include mineral evolution, mineral ecology, and mineral network analysis—methods that collectively consider the distribution and diversity of minerals through space and time. These strategies are fostering a deeper understanding of mineral co-occurrences and, for the first time, facilitating predictions of mineral species that occur on Earth but have yet to be discovered and described. | Robert M. Hazen Robert T. Downs Ahmed Eleish Peter Fox Olivier C. Gagné Joshua J. Golden Edward S. Grew Daniel R. Hummer Grethe Hystad Sergey V. Krivovichev Congrui Li Chao Liu Xiaogang Ma Shaunna M. Morrison Feifei Pan Alexander J. Pires Anirudh Prabhu Jolyon Ralph Simone E. Runyon Hao Zhong | 2019 | Engineering2019，5，3： | 2 |
| 4 | Study on construction of cDNA library of the treated changliver cell and quality analysis显示文摘 | Lin Juntang Jogenananda Pramanik Wang Congrui Zhang Huiyong Feng Huigen Yang Baosheng Li Yuchang Xu Cunshuan | 2004 | Indian Journal of Clinical Biochemistry2004，，2： | 1 |
| 5 | Study on construction of cDNA library of the treated changliver cell and quality analysis显示文摘 | Lin Juntang Jogenananda Pramanik Wang Congrui Zhang Huiyong Feng Huigen Yang Baosheng Li Yuchang Xu Cunshuan | 2004 | Indian Journal of Clinical Biochemistry2004，，2： | 1 |
| 6 | The Associated Factors of SARS-CoV-2 Reinfection by Omicron Variant—Guangdong Province,China,December 2022 to January 2023显示文摘Summary What is already known about this topic?Severe acute respiratory syndrome coronavirus 2(SARS-CoV-2)reinfection by variants is being reported commonly and has caused waves of epidemic in many countries.Because of dynamic zero policy,the SARSCoV-2 reinfection was less reported in China.What is added by this report?SARS-CoV-2 reinfections were observed in Guangdong Province between December 2022 and January 2023.This study estimated that the reinfection incidence was 50.0%for the original strain primary infections,35.2%for the Alpha or Delta variants,and 18.4%for the Omicron variant;The reinfection incidence within 3-6 months after primary infection by Omicron variant was 4.0%.Besides,96.2%reinfection cases were symptomatic while only 7.7%sought medical attention.What are the implications for public health practice?These findings suggest a reduced likelihood of an Omicron-driven epidemic resurgence in the short term but emphasize the importance of maintaining vigilant surveillance of emerging SARS-CoV-2 variants and conducting population-based antibody level surveys to inform response preparedness. | Chunsheng Cai Yihong Li Ting Hu Rongwei Liang Kaibin Wang Congrui Guo Yan Li Meng Zhang Min Kang | 2023 | China CDC weekly2023，5，18： | 1 |
| 7 | Aerosol oxalate and its implication to haze pollution in Shanghai,China显示文摘A total of 238 samples of PM2.5and TSP were analyzed to study the characteristics,sources,and formation pathways of aerosol oxalate in Shanghai in four seasons of 2007.The concentrations of oxalate were0.07–0.41 lg/m3in PM2.5and 0.10–0.48 lg/m3in TSP,respectively.Oxalate displayed a seasonal variation of autumn[summer[winter[spring in both PM2.5and TSP and was dominantly present in PM2.5in all samples.Correlation between oxalate and K?and high ratio of oxalate/K?suggested that biomass burning was a secondary source of aerosol oxalate in Shanghai,in addition to urban VOCs sources(vehicular and industrial emissions),especially in autumn.Secondary formation accounted for the majority of aerosol oxalate in Shanghai,which was supported by the high correlation of oxalate with nssSO42-,K?and NO3-,proceeding from different mechanisms.Relatively high ambient RH together with high cloud cover was found benefiting the secondary formation of aerosol oxalate.The in-cloud process(aqueous-phase oxidation)was proposed to be likely the major formation pathway of aerosol oxalate in Shanghai,which was supported by the high correlation of oxalate with nss-SO42-and K?,dominant residence of oxalate in droplet mode and result of favorable meteorological condition analysis.High correlation of oxalate and NO3-reflected the OH radical involved oxidation chemistry of the two species in the atmosphere and also suggested that gas-particle surface reactions and the evaporation–condensation process were both possible secondary formation pathways of aerosol oxalate in coarser particle mode([1.0 lm).As a major water-soluble organic compound in aerosols,concentration of oxalate showed a distinct negative correlation to the atmospheric visibility,which implied that aerosol organic compounds could play an important role in haze pollution as well as in air quality in Shanghai. | Yilun Jiang Guoshun Zhuang Qiongzhen Wang Tingna Liu Kan Huang Joshua S.Fu Juan Li Yanfen Lin Rong Zhang Congrui Deng | 2014 | Chinese Science Bulletin2014，59，2： | 1 |
| 8 | Gut microbiota bridges dietary nutrients and host immunity显示文摘Dietary nutrients and the gut microbiota are increasingly recognized to cross-regulate and entrain each other,and thus affect host health and immune-mediated diseases.Here,we systematically review the current understanding linking dietary nutrients to gut microbiota-host immune interactions,emphasizing how this axis might influence host immunity in health and diseases.Of relevance,we highlight that the implications of gut microbiota-targeted dietary intervention could be harnessed in orchestrating a spectrum of immune-associated diseases. | Lijuan Fan Yaoyao Xia Youxia Wang Dandan Han Yanli Liu Jiahuan Li Jie Fu Leli Wang Zhending Gan Bingnan Liu Jian Fu Congrui Zhu Zhenhua Wu Jinbiao Zhao Hui Han Hao Wu Yiwen He Yulong Tang Qingzhuo Zhang Yibin Wang Fan Zhang Xin Zong Jie Yin Xihong Zhou Xiaojun Yang Junjun Wang Yulong Yin Wenkai Ren | 2023 | Science China(Life Sciences)2023，66，11： | 0 |
| 9 | Remodeling of the osteoimmune microenvironment after biomaterials implantation in murine tibia: Single-cell transcriptome analysis显示文摘Osseointegration seems to be a foreign body reaction equilibrium due to the complicated interactions between the immune and skeletal systems.The heterogeneity of the osteoimmune microenvironment in the osseointegration of implant materials remains elusive.Here,a single-cell study involving 40043 cells is conducted,and a total of 10 distinct cell clusters are identified from five different groups.A preliminary description of the osteoimmune microenvironment revealed the diverse cellular heterogeneity and dynamic changes modulated by implant properties.The increased immature neutrophils,Ly6C+CCR2hi monocytes,and S100a8hi macrophages induce an aggressive inflammatory response and eventually lead to the formation of fibrous capsule around the stainless steel implant.The enrichment of mature neutrophils,FcgR1hi and differentiated immunomodulatory macrophages around the titanium implant indicates favorable osseointegration under moderate immune response.Neutrophil-depletion mice are conducted to explore the role of neutrophils in osseointegration.Neutrophils may improve bone formation by enhancing the recruitment of BMSCs via the CXCL12/CXCR3 signal axis.These findings contribute to a better knowledge of osteoimmunology and are valuable for the design and modification of‘osteoimmune-smart’biomaterials in the bone regeneration field. | Jia Li Congrui Zhao Yangbo Xu Lu Song Yanqi Chen Yuzi Xu Yang Ma Siyuan Wang Antian Xu Fuming He | 2023 | Bioactive Materials2023，，4： | 0 |
| 10 | Acoustic emission parameters and energy dissipation law of cyclic load and unload damage of dihydrate gypsum under different loading rate显示文摘In order to explore the effect of loading rate on physical and mechanical properties of dihydrate gypsum,cyclic loading and unloading mechanical tests were carried out at different loading rates.Test results were analyzed from the aspects of stress-strain curve,energy distribution mode,damage law and failure mode of specimen.The main research results obtained in the thesis are as follows:with the increase of the loading rate,the peak value of specimen damage first increases rapidly,and then in-creases slowly,and there is a damage threshold.In the early stage of loading,the dissipated energy of the specimen accounts for about 70%of the total energy,most of the total energy input is converted into dissipated energy.The elastic energy density shows an increasing trend with the increase of the loading rate.The elastic energy density is the highest when the loading rate is 400 N/s,and more elastic energy can be stored.The ratio of elastic energy ue/u increases with the in-crease of loading rate and tends to be stable.The acoustic emission data show that the acoustic emission signals present a certain agglomeration phenomenon at the unloading point,and there is a“blank period”between the unloading point and the emergence of the next acoustic emission activity.In the early stage of specimen loading,friction-type acoustic emission is mainly generated.The cumulative ringing count when the load reaches the peak failure stress at low loading rate is more,indicating that low loading rate will produce more acoustic emission activities.With the increase of loading rate,the cumulative ringing number per unit time increases,indicating that the increase of loading rate accelerates the damage and failure of dihydrate gypsum near the peak value.The failure mode of gypsum specimens is shear failure,and the increase of loading rate of shear failure angle shows an increasing trend.The larger the loading rate is,the higher the strength of the specimen is.The more energy the press inputs during the loading process,the higher the energy absorbed by the unit volume specimen,which aggravates the development,expansion and penetration of the internal cracks of the specimen,resulting in the larger shear angle of the specimen.The test results provide a more comprehensive theoretical basis for the study of damage characteristics of dihydrate gypsum during cyclic loading and unloading. | Yanyu Chu Gaofeng Ren Congrui Zhang Yin Zheng Dong Li | 2023 | Geohazard Mechanics2023，1，2： | 0 |
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