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276篇 您的检索式:作者名="TRAPNELL"
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1Impaired granulocyte-macrophage colony-stimulating factor bioactivity accelerates surgical recurrence in ileal crohn's disease显示文摘AIM To examine the relationship between elevated granulocyte-macrophage colony-stimulating factor(GMCSF) auto-antibodies(Ab) level and time to surgical recurrence after initial surgery for Crohn's disease(CD). METHODS We reviewed 412 charts from a clinical database at tertiary academic hospital. Patients included in the study had ileal or ileocolonic CD and surgical resection of small bowel or ileocecal region for management of disease. Serum samples were analyzed for serological assays including GM-CSF cytokine, GM-CSF Ab, ASCA Ig G and Ig A, and genetic markers including SNPs rs2066843, rs2066844, rs2066845, rs2076756 and rs2066847 in NOD2, rs2241880 in ATG16 L1, and rs13361189 in IRGM. Cox proportional-hazards models were used to assess the predictors of surgical recurrence.RESULTS Ninety six percent of patients underwent initial ileocecal resection(ICR) or ileal resection(IR) and subsequently 40% of patients required a second ICR/IR for CD. GMCSF Ab level was elevated at a median of 3.81 mcg/mL. Factors predicting faster time to a second surgery included elevated GM-CSF Ab [hazard ratio(HR) 3.52, 95%CI: 1.45-8.53, P = 0.005] and elevated GM-CSF cytokine(HR = 2.48, 95%CI: 1.31-4.70, P = 0.005). Factors predicting longer duration between first and second surgery included use of Immunomodulators(HR = 0.49, 95%CI: 0.31-0.77, P = 0.002), the interaction effect of low GM-CSF Ab levels and smoking(HR = 0.60, 95%CI: 0.45-0.81, P = 0.001) and the interaction effect of low GM-CSF cytokine levels and ATG16 L1(HR = 0.65, 95%CI: 0.49-0.88, P = 0.006).CONCLUSION GM-CSF bioavailability plays a critical role in maintaining intestinal homeostasis. Decreased bioavailability coupled with the genetic risk markers and/or smoking results in aggressive CD behavior.Grace Gathungu Yuanhao Zhang Xinyu Tian Erin Bonkowski Leahana Rowehl Julia Krumsiek Billy Nix Claudia Chalk Bruce Trapnell Wei Zhu Rodney Newberry Lee Denson Ellen Li 2018World Journal of Gastroenterology2018,24,5:5
2In vivo transfer of the human cystic fibrosis transmembrane conductance regulator gene to the airway epithelium显示文摘Rosenfeld MA Yoshimura K Trapnell BC 1992Cell1992,68,1:1
3Ultrafast and memory- ef{cient alignment of short DNA sequences to the human ge- nome 显示文摘Langmead B Trapnell C Pop M 2009Genome Biology2009,,:1
4Differential analysis of gene regulation at transcript resolution with RNA-seq显示文摘Trapnell C Hendrickson DG Sauvageau M 2013Nat Biotechnol2013,31,:1
5Inhaled granulocyte/macrophage colony stimulating factor as Therapy for pulmonaryalveolar proteinosis显示文摘Tazawa R Trapnell BC Inoue Y 2010Am J Respir Crit Care Med2010,181,12:1
6The molecular basis of pulmonary alveolarproteinosis显示文摘Carey B Trapnell BC 2010Clin Immunol2010,135,2:1
7Ultrafast and memory-efficient alignment of short DNA sequences to the human genome 显示文摘Langmead B Trapnell C Pop M 2009Genome Biology2009,10,3:1
8Evaluation of the concentration and bioactivity of adenovirus vectors for gene therapy显示文摘Mittereder N March KL Trapnell BC 1996Virol1996,70,3:1
9Comparative studyof high-resolution CT findings between autoimmune andsecondary pulmonary alveolar proteinosis显示文摘Ishii H Trapnell BC Tazawa R 2009Chest2009,136,5:1
10Characteristics of a large co- hort of patients with autoimmune pulmonary alveolar proteinosis in Ja- pan显示文摘Inoue Y Trapnell BC Tazawa R 2008Am J Respir Crit Care Med2008,,177:1
11Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses显示文摘Cabili M N Trapnell C Goff L 2011Genes development2011,25,18:1
12Private Self-consciousness and the Five-Factor Model of Personality: Distinguishing Rurnination from Reflection显示文摘Trapnell P D Campbell J D 1999Journal of Personality and Social Psychology1999,,76:1
13Transcript as sembly and quantification by RNA-Seq reveals unannotated transcripts and isoIorm switching during cell differentiation 显示文摘Trapnell C Williams B A Pertea G 2010NatBiotechnol2010,28,5:1
14Discovering splice junctions with RNA-Seq 显示文摘Trapnell C Pachter L Salzberg SL 2009Bioinformatics2009,25,9:1
15Pulmonary alveolar proteinosis显示文摘Trapnell BC Whitsett JA Nakata K 2003The New England Journal of Medicine2003,349,:1
16Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation显示文摘TRAPNELL C WILLIAMS B A PERTEA G 2010Nature Biotechnology2010,28,5:1
17Identification of novel transcripts in annotated genomes using RNA-Seq 显示文摘Roberts A Pimentel H Trapnell C 2011Bioinformatics2011,27,17:1
18Characteristics of a large cohort of patients with autoimmune pulmonary alveolar proteinosis in Japan显示文摘Inoue Y Trapnell B C Tazawa R 2008Am J Respir Crit Care Med2008,177,7:1
19Inhaled granulocyte/macrophage-colony stimulating factor as therapy for pulmonary alveolarproteinosis显示文摘Tazawa R Trapnell BC Inoue Y 2010Am J Respir Crit Care Med2010,181,12:1
20Adenoviral Vector for Gene Transfer显示文摘Trapnell BC 1993Adv Drug Deliv Rev1993,,12:1
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