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| 1 | Abundance,Diversity and Functional Potentials of Planktonic Bacteria and Microeukaryotes in the Coral-Reef System of Xisha Islands,China显示文摘Corals influence microorganisms within the surrounding seawater,yet the diversities and functions of seawater bacteria and microeukaryotes in coral-reef systems have not been well addressed.We collected 40 seawater samples in outer coral reef flats and semi-closed inner lagoons from the surface,middle and bottom layers in the pristine coral-reef system of Xisha Islands,South China Sea.We detected the abundance,composition and distribution of bacteria and microeukaryotes using flow cytometry,qPCR and high throughput sequencing techniques,and profiled the potential ecological roles based on the information of 16S and 18S rDNA sequencing.In terms of flow cytometry,Prochlorococcus dominated the autotrophs with cell abundance ranging from 5.8×10^(2)to 5.44×10^(3)cells mL−1 seawater.Based on qPCR,the 16S rDNA copies were much higher in coral reef flats than in lagoons(P=0.003).The bacterial communities held significantly lower diversity in bottom waters compared with surface and middle waters(P<0.05),which were dominated by SAR11,Flavobacteriales,and Synechococcus.Alveolata represented most of the microeukaryotic communities with Dinophyceae and Syndiniales well represented in all samples.Neither bacterial nor microeukaryotic community exhibited distinct layer or niche pattern,however,Haptophyta and Picozoa decreased with depth and SAR 86,MAST-3 and Picozoa were enriched in lagoons(P<0.05).To adapt the nutrient-poor and organic matter-rich environment,bacterial nitrogen fixation and assimilatory/dissimilatory nitrate reduction were active in the system,and mixotrophy was the most important trophic strategy among microeukaryotes.The study highlighted the ecological adaptability of seawater microbes to the unique coral-reef environments. | ZHANG Xiaoli WANG Lei PENG Saijun WUZHONG Qiyue ZHANG Lei DONG Zhijun SUN Tingting LIU Ping ZHANG Qianqian ZHAO Jianmin | 2022 | Journal of Ocean University of China2022，21，3： | 1 |
| 2 | Identification of a novel COL4A5 mutation in the proband initially diagnosed as Ig AN from a Chinese family with X-linked Alport syndrome显示文摘Alport syndrome(AS) is a hereditary progressive nephropathy characterized by hematuria, ultrastructural lesions of the glomerular basement membrane, ocular lesions and sensorineural hearing loss. Germline mutations of COL4 A5 are associated with X-linked AS with an extreme phenotypic heterogeneity. Here, we investigated a Chinese family with Alport syndrome. The proband was a 9-year-old boy with hematuria and proteinuria. Based on the test results of renal biopsy and immunofluorescence,the proband was initially diagnosed as Ig A nephropathy and the treatment was recommended accordingly. Meanwhile, we found that the treatment outcome was poor. Therefore, for proper clinical diagnosis and appropriate treatment, targeted exome-based next-generation sequencing has been undertaken. We identified a novel hemizygous single nucleotide deletion c.1902 del A in COL4 A5 gene. Segregation analysis identified that this novel mutation is co-segregated among the affected family members but absent in unaffected family members. The clinical diagnosis of the proband was revised as AS accompanied by Ig A nephropathy,which has been rarely reported. Our findings demonstrated the significance of the application of Genetic screening, expanded the mutation spectrum of COL4 A5 associated AS patients with atypical renal phenotypes and provided a good lesson to be learned from our detour during the diagnosis. | Zhihui Li Peng Zhu Hui Huang Ying Pan Peng Han Huanhuan Cui Zhijuan Kang Mai Xun Yi Zhang Saijun Liu Jian Wang Jing Wu | 2019 | Science China(Life Sciences)2019，62，12： | 0 |
| 3 | Bacterial communities associated with hydromedusa Gonionemus vertens in diff erent regions in Chinese coastal waters显示文摘Bacteria communities in cnidarian jellyfi sh can be harmful to many important aquaculture species,as they can be key vectors of bacterial pathogens.However,our knowledge of bacterial communities associated with jellyfi sh in culture ponds and their potential roles in the regulation of aquaculture species remains unclear.In this study,sequencing based on the bacterial 16S rRNA gene was used to investigate the composition and variation of the bacterial communities associated with hydromedusa Gonionemus vertens in sea cucumber culture ponds and natural marine environment.The associated bacterial communities of G.vertens from the culture ponds in the Yellow Sea and Bohai Sea had signifi cantly diff erent compositions,when compared with those from ambient seawater environment.Furthermore,bacterial communities associated with G.vertens had similar diversity and composition in culture ponds and natural marine environment in the Yellow Sea.There were 31 unique bacterial biomarkers identifi ed in three locations.The major communities were highly abundant in Kiloniellales,Octadecabacter,Polynucleobacter,and Polaribacter,and are related to the environmental information processing.Pathogen candidates such as Vibrionales and Chlamydiales had notably low relative abundances(<1%).The venom of the jellyfi sh was considered responsible for damage to the aquaculture.This study provides important data to help assess the impact of cnidarians-associated bacterial communities on pond aquaculture and the infl uences on material cycling and energy fl ow in marine ecosystems. | Wenjin HAO Lei WANG Fan LI Tingting SUN Saijun PENG Yongxue LI Jianmin ZHAO Zhijun DONG | 2022 | Journal of Oceanology and Limnology2022，40，4： | 0 |
| 4 | Molecular identifi cation and population diff erentiation of Aurelia spp.ephyrae in sea cucumber aquaculture ponds of northern China显示文摘Aurelia spp.ephyrae have been reported to form blooms in sea cucumber aquaculture ponds in the Bohai and Yellow Seas.To identify the species,we carried out a genetic analysis of Aurelia spp.ephyrae and medusae based on mitochondrial 16 S rRNA gene.Samples offour Aurelia sp.ephyrae populations were collected in sea cucumber aquaculture ponds and samples offour Aurelia sp.medusae populations were collected in coastal waters.Using a BLASTn search,we found that both the ephyrae collected in the aquaculture ponds and medusae collected in coastal waters belong to Aurelia coerulea.Seventeen haplotypes were recovered from the 16 S rRNA gene.The overall haplotype diversity and nucleotide diversity of the 166 A.coerulea individuals were 0.686%and 0.329%,respectively,indicating high haplotype diversity and low nucleotide diversity.Moreover,the haplotype diversity of ephyrae populations were generally lower than that of medusae populations with close sampling points.The genetic differentiation between ephyrae populations collected in the sea cucumber aquaculture ponds and A.coerulea medusae collected in coastal waters was not significant,suggesting the ephyrae populations in the sea cucumber culture ponds were part of the same genetic group as the medusae populations in the coastal waters.Phylogeographic analysis of the 16 S rRNA region revealed that there was no significant correlation between the haplotypes and the geographic distribution of populations.Pairwise fixation index values showed significant genetic differentiation and limited gene flow between A.coerulea population of Weifang and other locations. | Saijun PENG Qingqing LIU Lei WANG Tingting SUN Tamara SHIGANOVA Zhijun DONG | 2021 | Journal of Oceanology and Limnology2021，39，3： | 0 |
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