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| 1 | Chronosequencing methanogenic archaea in ancient Longji rice Terraces in China显示文摘Chronosequences of ancient rice terraces serve as an invaluable archive for reconstructions of historical human-environment interactions. Presently, however, these reconstructions are based on traditional soil physico-chemical properties. The microorganisms in palaeosols have been unexplored. We hypothesized that microbial information can be used as an additional proxy to complement and consolidate archaeological interpretations. To test this hypothesis, the palaeoenvironmental methanogenic archaeal DNA in Longji Terraces, one of the famous ancient terraces in China, dating back to the late Yuan Dynasty(CE1361–1406), was chronosequenced by high-throughput sequencing. It was found that the methanogenic archaeal abundance, diversity and community composition were closely associated with the 630 years of rice cultivation and in line with changes in multi-proxy data. Particularly, the centennial-and decadalscale influences of known historical events, including social turbulences(The Taiping Rebellion, CE1850–1865), palaeoclimate changes(the Little Ice Age) and recorded natural disasters(earthquakes and inundation), on ancient agricultural society were clearly echoed in the microbial archives as variations in alpha and beta diversity. This striking correlation suggests that the microorganisms archived in palaeosols can be quantitatively and qualitatively analyzed to provide an additional proxy, and palaeo-microbial information could be routinely incorporated in the toolkit for archaeological interpretation. | Youzhi Feng Jan Dolfing Zhiying Guo Jianwei Zhang Ganlin Zhang Shijie Li Xiangui Lin | 2017 | Science Bulletin2017，62，12： | 4 |
| 2 | Contribution of periphytic biofilm of paddy soils to carbon dioxide fixation and methane emissions显示文摘Rice paddies are major contributors to anthropogenic greenhouse gas emissions via methane(CH_(4))flux.The accurate quantification of CH_(4)emissions from rice paddies remains problematic,in part due to uncertainties and omissions in the contribution of microbial aggregates on the soil surface to carbon fluxes.Herein,we comprehensively evaluated the contribution of one form of microbial aggregates,periphytic biofilm(PB),to carbon dioxide(CO_(2))and CH_(4)emissions from paddies distributed across three climatic zones,and quantified the pathways that drive net CH_(4)production as well as CO_(2)fixation.We found that PB accounted for 7.1%-38.5%of CH_(4)emissions and 7.2%-12.7%of CO_(2)fixation in the rice paddies.During their growth phase,PB fixed CO_(2)and increased the redox potential,which promoted aerobic CH_(4)oxidation.During the decay phase,PB degradation reduced redox potential and increased soil organic carbon availability,which promoted methanogenic microbial community growth and metabolism and increased CH_(4)emissions.Overall,PB acted as a biotic converter of atmospheric CO_(2)to CH_(4),and aggravated carbon emissions by up to 2,318 kg CO_(2)equiv ha^(-1)season^(-1).Our results provide proof-of-concept evidence for the discrimination of the contributions of surface microbial aggregates(i.e.,PB)from soil microbes,and a profound foundation for the estimation and simulation of carbon fluxes in a potential novel approach to the mitigation of CH_(4)emissions by manipulating PB growth. | Sichu Wang Pengfei Sun Guangbin Zhang Neil Gray Jan Dolfing Sofia Esquivel-Elizondo Josep Peñuelas Yonghong Wu | 2022 | The Innovation2022，3，1： | 2 |
| 3 | Effect of Ca on the solubility and molecular size distribution of DOC and Cu binding in soil solution samples显示文摘 | Romkens Paul F A M Jan Dolfing | 1998 | Environ Sci Technol1998，32，： | 1 |
| 4 | Evidence of increasing antibiotic resistance gene abundances in archived soils since 1940显示文摘 | Charles W Knapp Jan Dolfing Phillip A | 2010 | Environment Science & Tech- nology2010，44，： | 1 |
| 5 | Nitrifier denitrification as a distinct and significant source of nitrous oxide from soil显示文摘 | Dorien M. Kool Jan Dolfing Nicole Wrage Jan Willem Van Groenigen | 2010 | Soil Biology and Biochemistry2010，，1： | 1 |
| 6 | Periphytic biofilms-mediated microbial interactions and their impact on the nitrogen cycle in rice paddies显示文摘Rice paddies are unique waterlogged wetlands artificially constructed for agricultural production.Periphytic biofilms(PBs)at the soil–water interface play an important role in rice paddies characterized by high nutrient input but low utilization efficiency.PBs are composed of microbial aggregates,including a wide variety of microorganisms(algae,bacteria,fungi,protozoa,and metazoa),extracellular polymeric substances and minerals(iron,aluminum,and calcium),which form an integrated food web and energy flux within a relatively stable micro-ecosystem.PBs are crucial to regulate and streamline the nitrogen cycle by neutralizing nitrogen losses and improving rice production since PBs can serve as both a sink by capturing surplus nitrogen and a source by slowly re-releasing this nitrogen for reutilization.Here the ecological advantages of PBs in regulating the nitrogen cycle in rice paddies are illustrated.We summarize the key functional importance of PBs,including the intricate and delicate community structure,microbial interactions among individual phylotypes,a wide diversity of selfproduced organics,the active adaptation of PBs to constantly changing environments,and the intricate mechanisms by which PBs regulate the nitrogen cycle.We also identify the future challenges of microbial interspecific cooperation in PBs and their quantitative contributions to agricultural sustainability,optimizing nitrogen utilization and crop yields in rice paddies. | Zhihao Chen Jan Dolfing Shunyao Zhuang Yonghong Wu | 2022 | Eco-Environment & Health2022，1，3： | 0 |
| 7 | Importance of periphytic biofilms for carbon cycling in paddy fields:A review显示文摘Paddy fields play an important role in global carbon(C) cycling and are an important source of methane(CH_(4)) emissions. Insights into the processes influencing the dynamics of soil organic C(SOC) in paddy fields are essential for maintaining global soil C stocks and mitigating climate change. Periphytic biofilms composed of microalgae, bacteria, and other microorganisms are ubiquitous in paddy fields, where they directly mediate the transfer of elements at the soil-water interface. However, their contributions to C turnover and exchange have been largely neglected. Periphytic biofilms affect and participate in soil C dynamics by altering both abiotic(e.g., pH and redox potential) and biotic conditions(e.g., microbial community composition and metabolism). This review summarizes the contributions of periphytic biofilms to soil C cycling processes, including carbon dioxide fixation, SOC mineralization, and CH_(4) emissions. Future research should be focused on: i) the mechanisms underlying periphytic biofilm-induced C fixation and turnover and ii) quantifying the contributions of periphytic biofilms to soil C uptake, stabilization, and sequestration in paddy fields. | Lei ZHOU Yonghong WU Junzhuo LIU Pengfei SUN Ying XU Jan DOLFING Robert GMSPENCER Erik JEPPESEN | 2024 | Pedosphere2024，34，1： | 0 |
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