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| 1 | 数据库中细菌与人源药物代谢酶的比较及肠道菌群对药物代谢影响的展望显示文摘聚焦药物代谢相关的各种数据库和文献,对细菌来源与人源药物代谢酶的相关信息进行整理与分析,比较数据库中细菌与人源药物代谢酶收录信息的异同。结果发现细菌来源药物代谢酶比人源药物代谢酶要多很多(9703 vs 964),但是细菌来源药物代谢酶的数量相较于BRENDA数据库中细菌酶的总体数量却少很多(9703 vs 20835235)。这说明细菌对药物代谢的影响可能被大大地低估,需要进行深入的系统性研究。本文总结了目前研究肠道菌群影响药物代谢的进展及不足,提出研究思路,即通过人工智能对肠道细菌来源蛋白是否具有药物代谢的能力进行预测,用基因编辑与体内外实验等方法进行生物学功能的验证,并建立注释功能完善的肠道菌群与药物代谢相关数据库,为如何深入挖掘肠道菌群对药物代谢影响的研究提供坚实的理论基础。 | 皇甫逸凡 冉雨叶 封硕 李菁 | 2023 | 中国药科大学学报2023，54，1： | 0 |
| 2 | Whole-genome sequencing in medicinal plants:current progress and prospect显示文摘Advancements in genomics have dramatically accelerated the research on medicinal plants,and the development of herbgenomics has promoted the“Project of 1K Medicinal Plant Genome”to decipher their genetic code.However,it is difficult to obtain their high-quality whole genomes because of the prevalence of polyploidy and/or high genomic heterozygosity.Whole genomes of 123 medicinal plants were published until September 2022.These published genome sequences were investigated in this review,covering their classification,research teams,ploidy,medicinal functions,and sequencing strategies.More than 1,000 institutes or universities around the world and 50 countries are conducting research on medicinal plant genomes.Diploid species account for a majority of sequenced medicinal plants.The whole genomes of plants in the Poaceae family are the most studied.Almost 40%of the published papers studied species with tonifying,replenishing,and heat-cleaning medicinal effects.Medicinal plants are still in the process of domestication as compared with crops,thereby resulting in unclear genetic backgrounds and the lack of pure lines,thus making their genomes more difficult to complete.In addition,there is still no clear routine framework for a medicinal plant to obtain a high-quality whole genome.Herein,a clear and complete strategy has been originally proposed for creating a high-quality whole genome of medicinal plants.Moreover,whole genome-based biological studies of medicinal plants,including breeding and biosynthesis,were reviewed.We also advocate that a research platform of model medicinal plants should be established to promote the genomics research of medicinal plants. | Yifei Pei Liang Leng Wei Sun Baocai Liu Xue Feng Xiwen Li Shilin Chen | 2024 | Science China(Life Sciences)2024，67，2： | 0 |
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